| Ινστιτούτο Βιοϊατρικών Ερευνών

E. Baltzi C. Papaloukas D.A. Spandidos, I. Michalopoulos (2024) “Genes encoding γ‑glutamyl‑transpeptidases in the allicin biosynthetic pathway in garlic (Allium sativum)” Biomedical Reports ,

Papagiannopoulos, O. D., Pezoulas, V. C., Papaloukas, C. & Fotiadis, D. I. (2024) 3D clustering of gene expression data from systemic autoinflammatory diseases using self-organizing maps (Clust3D). Computational and Structural Biotechnology Journal ,

Pezoulas, V. C. et al. (2024) Synthetic data generation methods in healthcare: A review on open-source tools and methods. Computational and Structural Biotechnology Journal ,

Pezoulas, V. C. et al. (2024) FHBF: Federated hybrid boosted forests with dropout rates for supervised learning tasks across highly imbalanced clinical datasets. Patterns 5 ,

Chalkiadaki K., Statoulla E., Zafeiri M., Haji N., Lacaille J.C., Powell C.M., Jafarnejad S.M., Khoutorsky A., Gkogkas C. G. (2023) Reversal of memory and autism-related phenotypes in Tsc2+/- mice via inhibition of Nlgn1. Front Cell Dev Biol , 10.3389/fcell.2023.1205112

Zorzompokou C., Ipeirotis M., Martzoukos M.K., Marangos, P. (correspondence). (2023) Detection of DNA Double-stranded Breaks in Mouse Oocytes. JoVE (J. Vis. Exp.) ,

O. Papagiannopoulos, K. Kourou, C. Papaloukas, ImmunAID Consortium, D.I. Fotiadis (2023) “Classification of Inflammation of Unknown Origin patients based on RNA-seq and SomaScan data” 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Conference (EMBC) ,

A. Koloi, V. Loukas, A. Sakellarios, J. Bosch, R. Quax, K. Nowakowska, J. Kamierski, C. Papaloukas, D.I. Fotiadis (2023) “A comparison study on creating simulated patient data for individuals suffering from chronic coronary disorders 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Conference (EMBC) ,

O.D. Papagiannopoulos, C. Papaloukas, D.I. Fotiadis (2023) “Deep Learning for Biomarkers Discovery in Auto-inflammatory Disorders” IEEE EMBS International Conference on Data Science and Engineering in Healthcare ,

O. Papagiannopoulos, K. Kourou, C. Papaloukas, D.I. Fotiadis (2022) “Comparison of High-Throughput Technologies in the Classification of Adult-Onset Still’s Disease Patients” 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) ,

V.C. Pezoulas, A. Liontos, E. Mylona, C. Papaloukas, O. Milionis, D. Biros, C. Kyriakopoulos, K. Kostikas, H. Milionis, D.I. Fotiadis (2022) “Predicting the need for mechanical ventilation and mortality in hospitalized COVID-19 patients who received heparin”, 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) ,

D. Katsarou, E.I. Georga, M. Christou, S. Tigas, C. Papaloukas, D.I. Fotiadis (2022) “Short Term Glucose Prediction in Patients with Type 1 Diabetes Mellitus” 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) ,

O.D. Papagiannopoulos, C. Papaloukas, V.C. Pezoulas, H.J.G. van de Werken, C. Poulet, Y.M. Mueller, P.D. Katsikis, D. de Seny, D.I. Fotiadis (2022) "Comparison of Proteomic Assay Methods in Autoinflammatory Disease Classification" IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) ,

V.C. Pezoulas, E. Mylona, C. Papaloukas, A. Liontos, D.I. Biros, O.I. Milionis, C. Kyriakopoulos, K. Kostikas, H. Milionis, D.I. Fotiadis (2022) "A hybrid approach based on dynamic trajectories to predict mortality in COVID-19 patients upon steroids administration", IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) ,

D.N. Katsarou, E.I. Georga, M. Christou, S. Tigas, C. Papaloukas, D.I. Fotiadis (2022) “An Exploratory Study of the Value of Vital Signs on the Short-term Prediction of Subcutaneous Glucose Concentration in Type 1 Diabetes – The GlucoseML Study” 16th EAI International Conference on Pervasive Computing Technologies for Healthcare (PervasiveHealth) ,

Kolliniati O, Ieronymaki E, Vergadi E, Tsatsanis C. (2022) Metabolic Regulation of Macrophage Activation J Innate Immun. [Abstract],

Daskalaki MG, Axarlis K, Aspevik T, Orfanakis M, Kolliniati O, Lapi I, Tzardi M, Dermitzaki E, Venihaki M, Kousoulaki K, Tsatsanis C. (2021) Fish Sidestream-Derived Protein Hydrolysates Suppress DSS-Induced Colitis by Modulating Intestinal Inflammation in Mice Mar Drugs. [Abstract],

Axarlis K, Daskalaki MG, Michailidou S, Androulaki N, Tsoureki A, Mouchtaropoulou E, Kolliniati O, Lapi I, Dermitzaki E, Venihaki M, Kousoulaki K, Argiriou A, Marsni ZE, Tsatsanis C. (2021) Diet Supplementation with Fish-Derived Extracts Suppresses Diabetes and Modulates Intestinal Microbiome in a Murine Model of Diet-Induced Obesity Mar Drugs. [Abstract],

Djiappi-Tchamen B, Nana-Ndjangwo MS, Mavridis K, Talipouo A, Nchoutpouen E, Makoudjou I, Bamou R, Mayi AMP, Awono-Ambene P, Tchuinkam T, Vontas J, Antonio-Nkondjio C. (2021) Analyses of Insecticide Resistance Genes in Aedes aegypti and Aedes albopictus Mosquito Populations from Cameroon Genes (Basel). [Abstract],

Papadopoulos A, Chalmantzi V, Mikhaylichenko O, Hyvönen M, Stellas D, Kanhere A, Heath J, Cunningham DL, Fotsis T, Murphy C. (2021) Combined transcriptomics and phosphoproteomic analysis of BMP4 signaling in human embryonic stem cells. Stem Cell Res. ,

Kostopoulou N, Bellou S, Bagli E, Markou M, Kostaras E, Hyvönen M, Kalaidzidis Y, Papadopoulos A, Chalmantzi V, Kyrkou A, Panopoulou E, Fotsis T, Murphy C. (2021) Embryonic stem cells are devoid of macropinocytosis, a trafficking pathway for activin a in differentiated cells J Cell Sci. [Abstract], 10.1242/jcs.246892

F. Moazami, A. Lefèvre-Utile, C. Papaloukas, V. Soumelis (2021) "Machine Learning Approaches in Study of Multiple Sclerosis Disease Through Magnetic Resonance Images" Frontiers in Immunology ,

A. Koloi, A.I. Sakellarios, V.C. Pezoulas, C. Papaloukas, M. Kleber, W. März, D.I. Fotiadis (2021) "Coronary Artery Stenosis Prediction using Machine Learning Algorithms", IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) ,

Pantazi I, Al-Qahtani AA, Alhamlan FS, Alothaid H, Matou-Nasri S, Sourvinos G, Vergadi E, Tsatsanis C. (2021) SARS-CoV-2/ACE2 Interaction Suppresses IRAK-M Expression and Promotes Pro-Inflammatory Cytokine Production in Macrophages Front Immunol. [Abstract],

Troczka BJ, Singh KS, Zimmer CT, Vontas J, Nauen R, Hayward A, Bass C. (2021) Molecular innovations underlying resistance to nicotine and neonicotinoids in the aphid Myzus persicae Pest Manag Sci. [Abstract],

Zelenka T, Spilianakis C. (2021) HiChIP and Hi-C Protocol Optimized for Primary Murine T Cells Methods Protoc. [Abstract],

Papanikolaou S, Bertsias GK, Nikolaou C. (2021) Extensive Changes in Transcription Dynamics Reflected on Alternative Splicing Events in Systemic Lupus Erythematosus Patients Genes (Basel). [Abstract],

Voutyraki C, Choromidis A, Theodorou V, Efraimoglou C, Anagnostopoulos G, Magadi SS, Grammenoudi S, Zacharioudaki E, Delidakis C. (2021) Repression of differentiation genes by Hes transcription factors fuels neural tumour growth in Drosophila Int J Dev Biol. [Abstract],

Deliconstantinos G, Kalodimou K, Delidakis C. (2021) Translational Control of Serrate Expression in Drosophila Cells In Vivo. [Abstract],

Papadopoulos A, Chalmantzi V, Hyvönen M, Stellas D, Syrrou M, Fotsis T, Murphy C. (2021) Supporting data on combined transcriptomic and phosphoproteomic analysis of BMP4 signaling in human embryonic stem cells Data Brief. [Abstract],

Markou M, Kouroupis D, Fotsis T, Bagli E, Murphy C. (2021) Basic concepts in 3D Cell Culture. Book chapter: Vascularisation in 3D Cell Culture. [Abstract], 10.1007/978-3-030-66749-8

Talipouo A, Mavridis K, Nchoutpouen E, Djiappi-Tchamen B, Fotakis EA, Kopya E, Bamou R, Kekeunou S, Awono-Ambene P, Balabanidou V, Balaska S, Wondji CS, Vontas J, Antonio-Nkondjio C. (2021) High insecticide resistance mediated by different mechanisms in Culex quinquefasciatus populations from the city of Yaoundé, Cameroon Sci Rep. [Abstract],

Diarra RA, Traore MM, Junnila A, Traore SF, Doumbia S, Revay EE, Kravchenko VD, Schlein Y, Arheart KL, Gergely P, Hausmann A, Beck R, Xue RD, Prozorov AM, Kone AS, Majambere S, Vontas J, Beier JC, Müller GC. (2021) Testing configurations of attractive toxic sugar bait (ATSB) stations in Mali, West Africa, for improving the control of malaria parasite transmission by vector mosquitoes and minimizing their effect on non-target insects Malar J. [Abstract],

Blow F, Gioti A, Goodhead IB, Kalyva M, Kampouraki A, Vontas J, Darby AC. (2020) Functional genomics of a symbiotic community: shared traits in the olive fruit fly gut microbiota Genome Biol Evol. [Abstract],

K. Kourou, V. Pezoulas, E. Georga, Th. Exarchos, C. Papaloukas, M. Voulgarelis, A. Goules, A. Nezos, A.G. Tzioufas, Η.M. Moutsopoulos, C. Mavragani, D.I. Fotiadis (2020) "Predicting Lymphoma Development by Exploiting Genetic Variants and Clinical Findings in a Machine Learning-Based Methodology With Ensemble Classifiers in a Cohort of Sjögren's Syndrome Patients" IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) ,

Delivanoglou N, Boziki M, Theotokis P, Kesidou E, Touloumi O, Dafi N, Nousiopoulou E, Lagoudaki R, Grigoriadis N, Charalampopoulos I, Simeonidou C. (2020) Spatio-temporal expression profile of NGF and the two-receptor system, TrkA and p75NTR, in experimental autoimmune encephalomyelitis J Neuroinflammation. [Abstract],

Mavropoulos Papoudas S, Papanikolaou N, Nikolaou C. (2020) Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks Comput Struct Biotechnol J. [Abstract],

Traore MM, Junnila A, Traore SF, Doumbia S, Revay EE, Kravchenko VD, Schlein Y, Arheart KL, Gergely P, Xue RD, Hausmann A, Beck R, Prozorov A, Diarra RA, Kone AS, Majambere S, Bradley J, Vontas J, Beier JC, Müller GC. (2020) Large-scale field trial of attractive toxic sugar baits (ATSB) for the control of malaria vector mosquitoes in Mali, West Africa Malar J. [Abstract],

Silva R, Mavridis K, Vontas J, Rodrigues A, Osório HC. (2020) Monitoring and molecular profiling of contemporary insecticide resistance status of malaria vectors in Guinea-Bissau Acta Trop. [Abstract],

Andreadaki M, Pace T, Grasso F, Siden-Kiamos I, Mochi S, Picci L, Bertuccini L, Ponzi M, Currà C. (2020) Plasmodium berghei Gamete Egress Protein is required for fertility of both genders Microbiologyopen. [Abstract],

Siden-Kiamos I, Spanos L, Currà C. (2020) A method for purification of Plasmodium oocysts from mosquito midguts Sci Rep. [Abstract],

Kokras N, Dioli C, Paravatou R, Sotiropoulos MG, Delis F, Antoniou K, Calogeropoulou T, Charalampopoulos I, Gravanis A, Dalla C. (2020) Psychoactive Properties of BNN27, a Novel Neurosteroid Derivate, in Male and Female Rats Psychopharmacology (Berl). [Abstract],

Singh KS, Troczka BJ, Duarte A, Balabanidou V, Trissi N, Carabajal Paladino LZ, Nguyen P, Zimmer CT, Papapostolou KM, Randall E, Lueke B, Marec F, Mazzoni E, Williamson MS, Hayward A, Nauen R, Vontas J, Bass C. (2020) The Genetic Architecture of a Host Shift: An Adaptive Walk Protected an Aphid and Its Endosymbiont From Plant Chemical Defenses Sci Adv. [Abstract],

Simbriger K, Amorim IS, Lach G, Chalkiadaki K, Kouloulia S, Jafarnejad SM, Khoutorsky A and Gkogkas C. G. (2020) Uncovering memory-related gene expression in contextual fear conditioning using ribosome profiling. Prog Neurobiol , 10.1016/j.pneurobio.2020.101903.

Atlasi Y, Jafarnejad SM, Gkogkas C. G., Vermeulen M, Sonenberg N, Stunnenberg HG. (2020) The translational landscape of ground state pluripotency Nat Commun , 10.1038/s41467-020-15449-9

McLeman A, Troczka BJ, Homem RA, Duarte A, Zimmer C, Garrood WT, Pym A, Beadle K, Reid RJ, Douris V, Vontas J, Davies TGE, Ffrench Constant R, Nauen R, Bass C. (2020) Fly-Tox: A panel of transgenic flies expressing pest and pollinator cytochrome P450s Pestic Biochem Physiol. [Abstract],

Ntasis VF, Panousis NI, Tektonidou MG, Dermitzakis ET, Boumpas DT, Bertsias GK, Nikolaou C. (2020) Extensive fragmentation and re-organization of transcription in Systemic Lupus Erythematosus Sci Rep. [Abstract],

Daskalaki MG, Bafiti P, Kikionis S, Laskou M, Roussis V, Ioannou E, Kampranis SC, Tsatsanis C. (2020) Disulfides from the Brown Alga Dictyopteris Membranacea Suppress M1 Macrophage Activation by Inducing AKT and Suppressing MAPK/ERK Signaling Pathways Mar Drugs. [Abstract],

Magadi SS, Voutyraki C, Anagnostopoulos G, Zacharioudaki E, Poutakidou IK, Efraimoglou C, Stapountzi M, Theodorou V, Nikolaou C, Koumbanakis KA, Fullard JF, Delidakis C. (2020) Dissecting Hes-centred transcriptional networks in neural stem cell maintenance and tumorigenesis in Drosophila Development. [Abstract],

Papadopoulos A, Chalmantzi V, Mikhaylichenko O, Hyvönen M, Stellas D, Kanhere A, Heath J, Cunningham DL, Fotsis T, Murphy C. (2020) Combined transcriptomic and phosphoproteomic analysis of BMP4 signaling in human embryonic stem cells Stem Cell Res. [Abstract],

Zelenka T, Spilianakis C. (2020) SATB1-mediated chromatin landscape in T cells Nucleus. [Abstract],

Bamou R, Sonhafouo-Chiana N, Mavridis K, Tchuinkam T, Wondji CS, Vontas J, Antonio-Nkondjio C. (2019) Status of Insecticide Resistance and Its Mechanisms in Anopheles gambiae and Anopheles coluzzii Populations from Forest Settings in South Cameroon Genes (Basel). [Abstract],

K. Kourou, C. Papaloukas, D.I. Fotiadis (2019) "Modeling biological data through dynamic bayesian networks for oral squamous cell carcinoma classification" World Congress on Medical Physics and Biomedical Engineering (2018) ,

Hoang HD, Graber TE, Jia JJ, Vaidya N, Gilchrist VH, Xiang X, Li W, Cowan KN, Gkogkas C. G., Jaramillo M, Jafarnejad SM, Alain T. (2019) Induction of an Alternative mRNA 5' Leader Enhances Translation of the Ciliopathy Gene Inpp5e and Resistance to Oncolytic Virus Infection. Cell Rep , 10.1016/j.celrep.2019.11.072

Kouloulia S, Hallin EI, Simbriger K, Amorim IS, Lach G, Amvrosiadis T, Chalkiadaki K, Kampaite A, Truong VT, Hooshmandi M, Jafarnejad SM, Skehel P, Kursula P, Khoutorsky A and Gkogkas C. G. (2019) Raptor-Mediated Proteasomal Degradation of Deamidated 4E-BP2 Regulates Postnatal Neuronal Translation and NF-κB Activity. Cell Rep , 10.1016/j.celrep.2019.11.023

Simbriger K, Amorim IS, Chalkiadaki K, Lach G, Jafarnejad SM, Khoutorsky A and Gkogkas C. G. (2019) Monitoring translation in synaptic fractions using a ribosome profiling strategy. J Neurosci Methods. , 10.1016/j.jneumeth.2019.108456

Athanasakoglou A, Grypioti E, Michailidou S, Ignea C, Makris AM, Kalantidis K, Massé G, Argiriou A, Verret F, Kampranis SC. (2019) Isoprenoid biosynthesis in the diatom Haslea ostrearia New Phytol. [Abstract],

Filiou MD, Sandi C. (2019) Anxiety and Brain Mitochondria: A Bidirectional Crosstalk Trends Neurosci. [Abstract],

Grant C, Jacobson R, Ilias A, Berger M, Bielza P, Zimmer CT, Williamson MS, Ffrench-Constant RH, Vontas J, Roditakis E, Bass C. (2019) The evolution of multiple-insecticide resistance in UK populations of tomato leafminer, Tuta absoluta Pest Manag Sci. [Abstract],

Ieronymaki E, Theodorakis EM, Lyroni K, Vergadi E, Lagoudaki E, Al-Qahtani A, Aznaourova M, Neofotistou-Themeli E, Eliopoulos AG, Vaporidi K, Tsatsanis C. (2019) Insulin Resistance in Macrophages Alters Their Metabolism and Promotes an M2-Like Phenotype J Immunol. [Abstract],

Daskalaki MG, Vyrla D, Harizani M, Doxaki C, Eliopoulos AG, Roussis V, Ioannou E, Tsatsanis C, Kampranis SC. (2019) Neorogioltriol and Related Diterpenes from the Red Alga Laurencia Inhibit Inflammatory Bowel Disease in Mice by Suppressing M1 and Promoting M2-Like Macrophage Responses Mar Drugs. [Abstract],

Piwko P, Vitsaki I, Livadaras I, Delidakis C. (2019) The Role of Insulators in Transgene Transvection in Drosophila Genetics. [Abstract],

Karagianni N, Kranidioti K, Fikas N, Tsochatzidou M, Chouvardas P, Denis MC, Kollias G, Nikolaou C. (2019) An integrative transcriptome analysis framework for drug efficacy and similarity reveals drug-specific signatures of anti-TNF treatment in a mouse model of inflammatory polyarthritis PLoS Comput Biol. [Abstract],

Bonetto G, Hivert B, Goutebroze L, Karagogeos D, Crépel V, Faivre-Sarrailh C. (2019) Selective Axonal Expression of the Kv1 Channel Complex in Pre-myelinated GABAergic Hippocampal Neurons Front Cell Neurosci. [Abstract],

Ieronymaki E, Daskalaki MG, Lyroni K, Tsatsanis C. (2019) Insulin Signaling and Insulin Resistance Facilitate Trained Immunity in Macrophages Through Metabolic and Epigenetic Changes Front Immunol. [Abstract],

Uttam, S., Wong, C, Amorim, I. S., Jafarnejad, S. M., Tansley, S., Yang, J., Prager-Khoutorsky, M., Mogil, J. S., Gkogkas, C. G.* and Khoutorsky, A.* (2018) Translational profiling of dorsal root ganglia and spinal cord in a mouse model of neuropathic pain. Neurobiology of pain , 10.1016/j.ynpai.2018.04.001

Amorim I.S., Kedia S., Kouloulia S., Simbriger K., Gantois I., Jafarnejad S. M., Li Y., Kampaite A., Pooters T., Romanò N and Gkogkas C. G. (2018) Loss of eIF4E phosphorylation engenders depression-like behaviors via selective mRNA translation. The Journal of neuroscience : the official journal of the Society for Neuroscience 21 , 10.1523/JNEUROSCI.2673-17.2018

Jafarnejad, S. M., Chapat, C., Matta-Camacho, E., Gelbart, I. A., Hesketh, G. G., Arguello, M., Garzia, A., Kim, S. H., Attig, J., Shapiro, M., Morita, M., Khoutorsky, A., Alain, T., Gkogkas, C., Stern-Ginossar, N., Tuschl, T., Gingras, A. C., Duchaine, T (2018) Translational control of ERK signaling through miRNA/4EHP-directed silencing. Elife 7 , 10.7554/eLife.35034

Siden-Kiamos I, Pace T, Klonizakis A, Nardini M, Garcia CRS, Currà C. (2018) Identification of Plasmodium berghei Oocyst Rupture Protein 2 (ORP2) domains involved in sporozoite egress from the oocyst Int J Parasitol. [Abstract],

Mathioudakis MM, Khechmar S, Owen CA, Medina V, Ben Mansour K, Tomaszewska W, Spanos T, Sarris PF, Livieratos IC. (2018) A Thioredoxin Domain-Containing Protein Interacts with Pepino mosaic virus Triple Gene Block Protein 1 Int J Mol Sci. [Abstract],

Blow F, Vontas J, Darby AC. (2017) Draft Genome Sequence of Chryseobacterium Strain CBo1 Isolated from Bactrocera oleae Genome Announc. [Abstract],

Argyros O, Lougiakis N, Kouvari E, Papafotika A, Raptopoulou CP, Psycharis V, Christoforidis S, Pouli N, Marakos P, Tamvakopoulos C. (2017) Design and synthesis of novel 7-aminosubstituted pyrido[2,3-b]pyrazines exhibiting anti-breast cancer activity Eur J Med Chem. [Abstract], 10.1016/j.ejmech.2016.12.025

Pinatel D, Hivert B, Saint-Martin M, Noraz N, Savvaki M, Karagogeos D, Faivre-Sarrailh C. (2017) The Kv1-associated molecules TAG-1 and Caspr2 are selectively targeted to axon initial segment in hippocampal neurons J Cell Sci. [Abstract],

Stathopoulou C, Kapsetaki M, Stratigi K, Spilianakis C. (2017) Long non-coding RNA SeT and miR-155 regulate the Tnfα gene allelic expression profile PLoS One. [Abstract],

Martin, L. J., Smith, S. B., Khoutorsky, A., Magnussen, C. A., Samoshkin, A., Sorge, R. E., Cho, C., Yosefpour, N., Sivaselvachandran, S., Tohyama, S., Cole, T., Khuong, T. M., Mir, E., Gibson, D. G., Wieskopf, J. S., Sotocinal, S. G., Austin, J. S., Meloto, C. B., Gitt, J. H., Gkogkas, C., Sonenberg, N., Greenspan, J. D., Fillingim, R. B., Ohrbach, R., Slade, G. D., Knott, C., Dubner, R., Nackley, A. G., Ribeiro-da-Silva, A., Neely, G. G., Maixner, W., Zaykin, D. V., Mogil, J. S. & Diatchenko, L. (2017) Epiregulin and EGFR interactions are involved in pain processing. J Clin Invest 127 , 10.1172/JCI87406

Daniilides K, Lougiakis N, Evangelidis T, Kostakis IK, Pouli N, Marakos P, Mikros E, Skaltsounis AL, Bach S, Baratte B, Ruchaud S, Karamani V, Papafotika A, Christoforidis S, Argyros O, Kouvari E, Tamvakopoulos C. (2017) Discovery of New Aminosubstituted Pyrrolopyrimidines with Antiproliferative Activity Against Breast Cancer Cells and Investigation of their Effect Towards the PI3Kα Enzyme Anticancer Agents Med Chem. [Abstract],

Moy, J. K., Khoutorsky, A., Asiedu, M. N., Black, B. J., Kuhn, J. L., Barragan-Iglesias, P., Megat, S., Burton, M. D., Burgos-Vega, C. C., Melemedjian, O. K., Boitano, S., Vagner, J., Gkogkas, C. G., Pancrazio, J. J., Mogil, J. S., Dussor, G., Sonenberg, (2017) he MNK-eIF4E Signaling Axis Contributes to Injury-Induced Nociceptive Plasticity and the Development of Chronic Pain. The Journal of neuroscience : the official journal of the Society for Neuroscience 37 , 10.1523/JNEUROSCI.0220-17.2017

Gantois, I., Khoutorsky, A., Popic, J., Aguilar-Valles, A., Freemantle, E., Cao, R., Sharma, V., Pooters, T., Nagpal, A., Skalecka, A., Truong, V. T., Wiebe, S., Groves, I. A., Jafarnejad, S. M., Chapat, C., McCullagh, E. A., Gamache, K., Nader, K., Lacaille, J. C., Gkogkas, C. G.* & Sonenberg, N.* (2017) Metformin ameliorates core deficits in a mouse model of fragile X syndrome. Nature medicine 23 , 10.1038/nm.4335

Tuttle, A. H., Tansley, S., Dossett, K., Tohyama, S., Khoutorsky, A., Maldonado-Bouchard, S., Stein, L., Gerstein, L., Crawhall-Duk, H., Pearl, R., Sukosd, M., Leger, P., Hardt, O. M., Yachnin, D., Austin, J. S., Chan, C. M., Pooters, T., Groves, I., Martin, L. J., Sonenberg, N., Gkogkas, C. G.* & Mogil, J. S.* (2017) Social propinquity in rodents as measured by tube cooccupancy differs between inbred and outbred genotypes. Proceedings of the National Academy of Sciences of the United States of America 114 , 10.1073/pnas.1703477114

Chapat, C., Jafarnejad, S. M., Matta-Camacho, E., Hesketh, G. G., Gelbart, I. A., Attig, J., Gkogkas, C. G., Alain, T., Stern-Ginossar, N., Fabian, M. R., Gingras, A. C., Duchaine, T. F. & Sonenberg, N. (2017) Cap-binding protein 4EHP effects translation silencing by microRNAs. Proceedings of the National Academy of Sciences of the United States of America , 10.1073/pnas.1701488114

Blow F, Vontas J, Darby AC. (2016) Draft Genome Sequence of Stenotrophomonas maltophilia SBo1 Isolated from Bactrocera oleae Genome Announc. 2016 Sep 22;4(5). [Abstract],

Blow F, Gioti A, Starns D, Ben-Yosef M, Pasternak Z, Jurkevitch E, Vontas J, Darby AC. (2016) Draft Genome Sequence of the Bactrocera oleae Symbiont 'Candidatus Erwinia dacicola Genome Announc. [Abstract],

Papanastasiou M., Orfanoudaki G., Kountourakis N., Koukaki M., Sardis M.F., Aivaliotis M., Tsolis K.C., Karamanou S., Economou A. (2016) Rapid label-free quantitative analysis of the E. coli BL21(DE3) inner membrane proteome Proteomics. [Abstract],

Portaliou A.G., Tsolis K.C., Loos M.S., Zorzini V., Economou A. (2016) Type III Secretion: Building and Operating a Remarkable Nanomachine Trends Biochem Sci. [Abstract],

Tsolis K.C., Bagli E., Kanaki K., Zografou S., Carpentier S., Bei E.S., Christoforidis S., Zervakis M., Murphy C., Fotsis T., Economou A. (2016) Proteome Changes during Transition from Human Embryonic to Vascular Progenitor Cells J Proteome Res. [Abstract], 10.1021/acs.jproteome.6b00180.

Kyrkou A, Stellas D, Syrrou M, Klinakis A, Fotsis T, Murphy C. (2016) Generation of human induced pluripotent stem cells in defined, feeder-free conditions Stem Cell Res. [Abstract],

Tahmasebi S., Jafarnejad S. M., Tam I. S., Gonatopoulos-Pournatzis T., Matta-Camacho E., Tsukumo Y., Yanagiya A., Li W., Atlasi Y., Caron M., Braunschweig U., Pearl D., Khoutorsky A., Gkogkas C. G., Nadon R., Bourque G., Yang X. J., Tian B., Stunnenberg H (2016) Control of embryonic stem cells self-renewal and differentiation via coordinated splicing and translation of YY2. PNAS , 10.1073/pnas.1615540113

Khoutorsky, A., Sorge R.E., Prager-Khoutorsky M., Pawlowski S. A., Longod G., Jafarnejad S. M., Tahmasebi S., Martin L., Pitchere M. H., Gkogkas C. G., Sharif-Naeinig R., Alfredo Ribeiro-da-Silvad A., Bourque C. W., Cerveroh F., Mogil J. S., & Sonenberg N (2016) eIF2alpha phosphorylation controls thermal nociception PNAS , 10.1073/pnas.1614047113

Skalecka, A., Liszewska, E., Bilinski, R., Gkogkas, C., Khoutorsky, A., Malik, A. R., Sonenberg, N. & Jaworski, J. (2016) mTOR kinase is needed for the development and stabilization of dendritic arbors in newly born olfactory bulb neurons Dev Neurobiol , 10.1002/dneu.22392

Bozelos, P., Stefanou, S.S., Bouloukakis, G., Melachrinos, C., Poirazi, P. (2016) REMOD: A Tool for Analyzing and Remodeling the Dendritic Architecture of Neural Cells Front Neuroanat. 9:156. [Abstract],

Katsarou K, Wu Y, Zhang R, Bonar N, Morris J, Hedley PE, Bryan GJ, Kalantidis K, Hornyik C. (2016) Insight on Genes Affecting Tuber Development in Potato upon Potato spindle tuber viroid (PSTVd) Infection PLoS One. [Abstract],

Louis C. (2016) Médecins Sans Frontières and the refugee crisis in Greece: An interview with Dr. Apostolos Veizis Pathog Glob Health. 110(6):219-222 [Abstract],

Blow F, Vontas J, Darby AC. (2016) Draft Genome Sequence of Stenotrophomonas maltophilia SBo1 Isolated from Bactrocera oleae Genome Announc. [Abstract],

Blow F, Gioti A, Starns D, Ben-Yosef M, Pasternak Z, Jurkevitch E, Vontas J, Darby AC. (2016) Draft Genome Sequence of the Bactrocera oleae Symbiont 'Candidatus Erwinia dacicola' Genome Announc. 4(5) [Abstract],

Stilianakis NI, Syrris V, Petroliagkis T, Pärt P, Gewehr S, Kalaitzopoulou S, Mourelatos S, Baka A, Pervanidou D, Vontas J, Hadjichristodoulou C. (2016) Identification of Climatic Factors Affecting the Epidemiology of Human West Nile Virus Infections in Northern Greece PLoS One. [Abstract],

Ferreira GB, Vanherwegen AS, Eelen G, Gutiérrez ACF, Van Lommel L, Marchal K, Verlinden L, Verstuyf A, Nogueira T, Georgiadou M, Schuit F, Eizirik DL, Gysemans C, Carmeliet P, Overbergh L, Mathieu C. (2015) Vitamin D3 Induces Tolerance in Human Dendritic Cells by Activation of Intracellular Metabolic Pathways. Cell Rep ,

Doxaki C, Kampranis SC, Eliopoulos AG, Spilianakis C, Tsatsanis C. (2015) Coordinated Regulation of miR-155 and miR-146a Genes during Induction of Endotoxin Tolerance in Macrophages J Immunol. [Abstract],

Khoutorsky, A., Bonin, R. P., Sorge, R. E., Gkogkas, C. G., Pawlowski, S. A., Jafarnejad, S. M., Pitcher, M. H., Alain, T., Perez-Sanchez, J., Salter, E. W., Martin, L., Ribeiro-da-Silva, A., De Koninck, Y., Cervero, F., Mogil, J. S. & Sonenberg, N. (2015) Translational control of nociception via 4E-binding protein 1 Elife 4 , 10.7554/eLife.12002

Maity, S., Rah, S., Sonenberg, N., Gkogkas, C. G. & Nguyen, P. V. (2015) Norepinephrine triggers metaplasticity of LTP by increasing translation of specific mRNAs. Learn Mem 22 , 10.1101/lm.039222.115

Aguilar-Valles, A., Matta-Camacho, E., Khoutorsky, A., Gkogkas, C., Nader, K., Lacaille, J. C. & Sonenberg, N. (2015) Inhibition of Group I Metabotropic Glutamate Receptors Reverses Autistic-Like Phenotypes Caused by Deficiency of the Translation Repressor eIF4E Binding Protein 2. The Journal of neuroscience : the official journal of the Society for Neuroscience 35 , 10.1523/JNEUROSCI.4615-14.2015

Cao, R., Gkogkas, C. G., de Zavalia, N., Blum, I. D., Yanagiya, A., Tsukumo, Y., Xu, H., Lee, C., Storch, K. F., Liu, A. C., Amir, S. & Sonenberg, N. (2015) Light-regulated translational control of circadian behavior by eIF4E phosphorylation. Nature Neuroscience 18 , 10.1038/nn.4010

Aulas, A., Caron, G., Gkogkas, C. G., Mohamed, N. V., Destroismaisons, L., Sonenberg, N., Leclerc, N., Parker, J. A. & Vande Velde, C. (2015) G3BP1 promotes stress-induced RNA granule interactions to preserve polyadenylated mRNA. J Cell Biol 209 , 10.1083/jcb.201408092

Kiparaki M, Zarifi I, Delidakis C. (2015) bHLH proteins involved in Drosophila neurogenesis are mutually regulated at the level of stability Nucleic Acids Res. [Abstract],

Mitraka E, Topalis P, Dritsou V, Dialynas E, Louis C. (2015) Describing the breakbone fever: IDODEN, an ontology for dengue fever PLoS Negl Trop Dis. [Abstract],

Pinatel D, Hivert B, Boucraut J, Saint-Martin M, Rogemond V, Zoupi L, Karagogeos D, Honnorat J, Faivre-Sarrailh C. (2015) Inhibitory axons are targeted in hippocampal cell culture by anti-Caspr2 autoantibodies associated with limbic encephalitis Front Cell Neurosci. [Abstract],

Ho VM, Dallalzadeh LO, Karathanasis N, Keles MF, Vangala S, Grogan T, Poirazi P, Martin KC. (2014) GluA2 mRNA distribution and regulation by miR-124 in hippocampal neurons Mol Cell Neurosci. [Abstract],

Delidakis C. (2014) Tempering temperature changes for robust development Cell. [Abstract],

Kostaras E, Pedersen NM, Stenmark H, Fotsis T, Murphy C. (2014) SARA and RNF11 at the crossroads of EGFR signaling and trafficking Methods Enzymol. [Abstract],

Gkogkas, C. G., Khoutorsky, A., Cao, R., Jafarnejad, S. M., Prager-Khoutorsky, M., Giannakas, N., Kaminari, A., Fragkouli, A., Nader, K., Price, T. J., Konicek, B. W., Graff, J. R., Tzinia, A. K., Lacaille, J. C. & Sonenberg, N. (2014) Pharmacogenetic inhibition of eIF4E-dependent Mmp9 mRNA translation reverses fragile X syndrome-like phenotypes Cell reports 9 , 10.1016/j.celrep.2014.10.064

Jung, H., Gkogkas, C. G., Sonenberg, N. & Holt, C. E. (2014) Remote control of gene function by local translation. Cell 157 , 10.1016/j.cell.2014.03.005

Tahmasebi, S., Alain, T., Rajasekhar, V. K., Zhang, J. P., Prager-Khoutorsky, M., Khoutorsky, A., Dogan, Y., Gkogkas, C. G., Petroulakis, E., Sylvestre, A., Ghorbani, M., Assadian, S., Yamanaka, Y., Vinagolu-Baur, J. R., Teodoro, J. G., Kim, K., Yang, X. J. & Sonenberg, N. (2014) Multifaceted regulation of somatic cell reprogramming by mRNA translational control. Cell Stem Cell 14 , 10.1016/j.stem.2014.02.005

Filiou MD, Moy J, Wang M, Guillermier C, Poczatek C, Turck C, Lechene C. (2014) Effect of an anti-depressant on mouse hippocampus protein turnover using MIMS. Surf Interface Anal ,

Kux K, Kiparaki M, Delidakis C. (2013) The two Tribolium E(spl) genes show evolutionarily conserved expression and function during embryonic neurogenesis Mech Dev. [Abstract],

Charlton JJ, Chatzidakis I, Tsoukatou D, Boumpas DT, Garinis GA, Mamalaki C. (2013) Programmed death-1 shapes memory phenotype CD8 T cell subsets in a cell-intrinsic manner J Immunol. [Abstract],

Kyrkou A, Soufi M, Bahtz R, Ferguson C, Bai M, Parton RG, Hoffmann I, Zerial M, Fotsis T, Murphy C. (2013) The RhoD to centrosomal duplication Small GTPases. [Abstract],

Kostaras E, Sflomos G, Pedersen NM, Stenmark H, Fotsis T, Murphy C. (2013) SARA and RNF11 interact with each other and ESCRT-0 core proteins and regulate degradative EGFR trafficking Oncogene. [Abstract],

Kyrkou A, Soufi M, Bahtz R, Ferguson C, Bai M, Parton RG, Hoffmann I, Zerial M, Fotsis T, Murphy C. (2013) RhoD participates in the regulation of cell-cycle progression and centrosome duplication Oncogene. [Abstract],

Gkogkas, C. G. & Sonenberg, N. (2013) Translational control and autism-like behaviors. Cell Logist 3 , 10.4161/cl.24551

Cao, R., Robinson, B., Xu, H., Gkogkas, C., Khoutorsky, A., Alain, T., Yanagiya, A., Nevarko, T., Liu, A. C., Amir, S. & Sonenberg, N. (2013) Translational control of entrainment and synchrony of the suprachiasmatic circadian clock by mTOR/4E-BP1 signaling. Neuron 79 , 10.1016/j.neuron.2013.06.026

Khoutorsky, A., Gkogkas, C. G.*, Yanagiya, A.*, Fabian, M. R., Prager-Khoutorsky, M., Cao, R., Gamache, K., Bouthiette, F., Parsyan, A., Sorge, R. E., Mogil, J. S., Nader, K., Lacaille, J. C. & Sonenberg, N. (2013) Control of synaptic plasticity and memory via suppression of poly(A)-binding protein. Control of synaptic plasticity and memory via suppression of poly(A)-binding protein. , 10.1016/j.neuron.2013.02.025

Ran, I., Gkogkas, C. G., Vasuta, C., Tartas, M., Khoutorsky, A., Laplante, I., Parsyan, A., Nevarko, T., Sonenberg, N. & Lacaille, J. C. (2013) Selective regulation of GluA subunit synthesis and AMPA receptor-mediated synaptic function and plasticity by the translation repressor 4E-BP2 in hippocampal pyramidal cells. The Journal of neuroscience : the official journal of the Society for Neuroscience 33 , 10.1523/JNEUROSCI.3264-12.2013

Gkogkas, C. G., Khoutorsky, A., Ran, I., Rampakakis, E., Nevarko, T., Weatherill, D. B., Vasuta, C., Yee, S., Truitt, M., Dallaire, P., Major, F., Lasko, P., Ruggero, D., Nader, K., Lacaille, J. C. & Sonenberg, N. (2013) Autism-related deficits via dysregulated eIF4E-dependent translational control. Nature 493 , 10.1038/nature11628

Topalis P, Mitraka E, Dritsou V, Dialynas E, Louis C. (2013) IDOMAL: the malaria ontology revisited J Biomed Semantics. [Abstract],

Mu L, Berti L, Masserdotti G, Covic M, Michaelidis TM, Doberauer K, Merz K, Rehfeld F, Haslinger A, Wegner M, Sock E, Lefebvre V, Couillard-Despres S, Aigner L, Berninger B, Lie DC. (2012) SoxC transcription factors are required for neuronal differentiation in adult hippocampal neurogenesis J Neurosci. [Abstract],

Chua, J. J., Schob, C., Rehbein, M., Gkogkas, C. G., Richter, D. & Kindler, S. (2012) Synthesis of two SAPAP3 isoforms from a single mRNA is mediated via alternative translational initiation. Sci Rep 2 , 10.1038/srep00484

Parsyan, A., Svitkin, Y., Shahbazian, D., Gkogkas, C., Lasko, P., Merrick, W. C. & Sonenberg, N. (2011) mRNA helicases: the tacticians of translational control. Nat Rev Mol Cell Biol 12 , 10.1038/nrm3083

Gkogkas, C., Wardrope, C., Hannah, M. & Skehel, P. (2011) The ALS8-associated mutant VAPB(P56S) is resistant to proteolysis in neurons. J Neurochem 117 , 10.1111/j.1471-4159.2011.07201.x

Sflomos G, Kostaras E, Panopoulou E, Pappas N, Kyrkou A, Politou AS, Fotsis T, Murphy C. (2011) ERBIN is a new SARA-interacting protein: competition between SARA and SMAD2 and SMAD3 for binding to ERBIN J Cell Sci. [Abstract],

Gkogkas, C., Sonenberg, N. & Costa-Mattioli, M. (2010) Translational control mechanisms in long-lasting synaptic plasticity and memory J Biol Chem 285 , 10.1074/jbc.R110.154476

Bidinosti, M., Ran, I., Sanchez-Carbente, M. R., Martineau, Y., Gingras, A. C., Gkogkas, C., Raught, B., Bramham, C. R., Sossin, W. S., Costa-Mattioli, M., DesGroseillers, L., Lacaille, J. C. & Sonenberg, N. (2010) Postnatal deamidation of 4E-BP2 in brain enhances its association with raptor and alters kinetics of excitatory synaptic transmission. Mol Cell 37 , 10.1016/j.molcel.2010.02.022

Rampakakis, E., Gkogkas, C., Di Paola, D. & Zannis-Hadjopoulos, M. (2010) Replication initiation and DNA topology: The twisted life of the origin. J Cell Biochem 110 , 10.1002/jcb.22557

Giokas S, Thomaz D, Douris V, Lecanidou R and Rodakis GC. (2010) 5000 years of molecular evolution in a population of the land snail Αlbinaria caerulea transported by humans. Journal of Molluscan Studies ,

Papatheodorou LK, Malizos KN, Poultsides LA, Hantes ME, Grafanaki K, Giannouli S, Ioannou MG, Koukoulis GK, Protopappas VC, Fotiadis DI, Stathopoulos C. (2009) Effect of transosseous application of low-intensity ultrasound at the tendon graft-bone interface healing: gene expression and histological analysis in rabbits Ultrasound Med Biol. [Abstract],

Kardassis D, Murphy C, Fotsis T, Moustakas A, Stournaras C. (2009) Control of transforming growth factor beta signal transduction by small GTPases FEBS J. [Abstract],

Michaelidis TM, Lie DC. (2008) Wnt signaling and neural stem cells: caught in the Wnt web Cell Tissue Res. [Abstract],

Gkogkas, C., Middleton, S., Kremer, A. M., Wardrope, C., Hannah, M., Gillingwater, T. H. & Skehel, P. (2008) VAPB interacts with and modulates the activity of ATF6 Hum Mol Genet 17 , 10.1093/hmg/ddn040

Murphy C. (2007) Endo-fin-ally a SARA for BMP receptors J Cell Sci. [Abstract],

Apostolova, G., Dorn, R., Ka, S., Hallbook, F., Lundeberg, J., Liser, K., Hakim, V., Brodski, C., Michaelidis, T. M., and Dechant, G. (2007) Neurotransmitter phenotype-specific expression changes in developing sympathetic neurons. Mol. Cell. Neurosci. ,

Anagnostakis AG, Tzima M, Sakellaris GC, Fotiadis DI, Likas AC. (2005) Semantics-based information modeling for the health-care administration sector: the citation platform IEEE Trans Inf Technol Biomed. [Abstract],

Foltopoulou PF, Zachariadis GA, Politou AS, Tsiftsoglou AS, Papadopoulou LC. (2004) Human recombinant mutated forms of the mitochondrial COX assembly Sco2 protein differ from wild-type in physical state and copper binding capacity Mol Genet Metab. [Abstract],

P.F. Foltopoulou, G.A. Zachariadis, A.S. Politou, A.S. Tsiftsoglou and L.C. Papadopoulou (2004) Recombinant human wild-type and mutated forms of the mitochondrial Cox assembly Sco2 protein differ in physical state and copper binding capacity Mol. Genet. Metab. ,

Gkogkas, C. G.*, Vernikos, G. S.*, Promponas, V. J. & Hamodrakas, S. J. (2003) GeneViTo: visualizing gene-product functional and structural features in genomic datasets. BMC Bioinformatics 4 , 10.1186/1471-2105-4-53

N. Biris, A. Stavrakoudis, A.S. Politou, E. Mikros, M. Sakarellos-Daitsiotis, C. Sakarellos and V. Tsikaris (2003) Slow conformational exchange of short linear peptides in DMSO solution: The example of Ac-RGD-NH2 Biopolymers ,

Crochemore, C. T. M. Michaelidis, D. Fischer, J.-Ph. Loeffler, and O. F. X. Almeida. (2002) Enhancement of p53 activity and inhibition of neural cell proliferation by activated glucocorticoid receptors. FASEB J. ,

Kotanidou A, Xagorari A, Bagli E, Kitsanta P, Fotsis T, Papapetropoulos A, Roussos C. (2002) Luteolin reduces lipopolysaccharide-induced lethal toxicity and expression of proinflammatory molecules in mice Am J Respir Crit Care Med. [Abstract],

R. Sandoval, A. B. Malik, R. D. Minshall, P. Kouklis, C. A. Ellis and C. Tiruppathi. (2001) Ca 2+ signalling and PKCa activate increased endothelial permeability by dissasembly of VE-cadherin junctions. J. Physiol. 533 ,

Kappes F, Burger K, Baack M, Fackelmayer FO, Gruss C. (2001) Subcellular localization of the human proto-oncogene protein DEK J Biol Chem. [Abstract],

S. Vrtala, K. Hirtenlehner, M. Susani, M. Akdis, F. Kussebi, C.A. Akdis, K. Blaser, P. Hufnagl, B.R. Binder, A. Politou, A. Pastore, L. Vangelista, W. R. Sperr, H. Semper, P. Valent, C. Ebner, D. Kraft and R. Valenta (2001) Genetic engineering of a hypoallergenic trimer of the major birch pollen allergen Bet FASEB J ,

Eckerich, C., Fackelmayer, F. O., and Knippers, R. (2001) Zinc affects the conformation of nucleoprotein filaments formed by replication protein A (RPA) and long natural DNA molecules Biochim Biophys Acta ,

Almeida, O. F. X., G. L. Condé, C. Crochemore, B. A. Demeneix, D. Fischer, A. H. S. Hassan, M. Meyer, F. Holsboer, and T. M. Michaelidis. (2000) Subtle shifts in the ratio between pro- and anti-apoptotic molecules following activation of corticosteroid receptors decide neuronal fate. FASEB J. ,

Kipp, M., Göhring, F., Ostendorp, T., van Drunen, C. M., van Driel, R., Przybylski, M., and Fackelmayer, F. O. (2000) SAF-Box, a Conserved Protein Domain That Specifically Recognizes Scaffold Attachment Region DNA Mol Cell Biol ,

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Lonning, P.E., Johannessen, D.C., Lien, E.A., Ekse, D., Fotsis, T., and Adlercreutz, H. (1995) Influence of tamoxifen on sex hormones, gonadotrophins and sex hormone binding globulin in postmenopausal brease cancer patients. J. Steroid Biochem. Mol. Biol. ,

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