Research

Chalkiadaki K., Statoulla E., Zafeiri M., Voudouri G., Amvrosiadis T., Typou A., Theodoridou N., Moschovas D., Avgeropoulos A., Samiotaki M., Mason J. O. and Gkogkas CG. (2024) GABA/Glutamate neuron differentiation imbalance and increased AKT/mTOR signalling in CNTNAP2-/- cerebral organoids. bioRxiv , https://doi.org/10.1101/2024.04.21.590378

Chatterjee S, Naeli P, Onar O, Simms N, Garzia A, Hackett A, Coyle K, Harris Snell P, McGirr T, Sawant TN, Dang K, Stoichkova ZV, Azam Y, Saunders MP, Braun M, Alain T, Tuschl T, McDade SS, Longley DB, Gkogkas CG, Adrain C, Knight JRP, Jafarnejad SM. (2024) Ribosome Quality Control mitigates the cytotoxicity of ribosome collisions induced by 5-Fluorouracil. Nucleic Acids Res. , 10.1093/nar/gkae849

Lister KC, Wong C, Uttam S, Parisien M, Stecum P, Brown N, Cai W, Hooshmandi M, Gu N, Amiri M, Beaudry F, Jafarnejad SM, Tavares-Ferreira D, Inturi NN, Mazhar K, Zhao HT, Fitzsimmons B, Gkogkas CG, Sonenberg N, Price TJ, Diatchenko L, Atlasi Y, Mogil JS, Khoutorsky A. (2024) Translational control in the spinal cord regulates gene expression and pain hypersensitivity in the chronic phase of neuropathic pain. bioRxiv , 10.1101/2024.06.24.600539.

Ypsilantis K, Sifnaiou E, Garypidou A, Kordias D, Magklara A, Garoufis A. (2024) Ruthenium-Cyclopentadienyl-Cycloparaphenylene Complexes: Sizable Multicharged Cations Exhibiting High DNA-Binding Affinity and Remarkable Cytotoxicity. Molecules 29(2) ,

Foutadakis S, Kordias D, Vatsellas G and Magklara A. (2024) Identification of New Chemoresistance-Associated Genes in Triple-Negative Breast Cancer by Single-Cell Transcriptomic Analysis. Int. J. Mol. Sci. 25(13) ,

E. Baltzi C. Papaloukas D.A. Spandidos, I. Michalopoulos (2024) “Genes encoding γ‑glutamyl‑transpeptidases in the allicin biosynthetic pathway in garlic (Allium sativum)” Biomedical Reports ,

Choleva E, Menounou L, Ntenekou D, Kastana P, Tzoupis Η, Katraki-Pavlou S, Drakopoulou M, Spyropoulos D, Andrikopoulou A, Kanellopoulou V, Enake MK, Beis D, Papadimitriou E. (2024) Targeting the interaction of pleiotrophin and VEGFA165 with protein tyrosine phosphatase receptor zeta 1 inhibits endothelial cell activation and angiogenesis. Eur J Pharmacol ,

Vrettos EΙ, Kyrkou SG, Zoi V, Giannakopoulou M, Chatziathanasiadou MV, Kanaki Z, Agalou A, Bistas VP, Kougioumtzi A, Karampelas T, Diamantis DA, Murphy C, Beis D, Klinakis A, Tamvakopoulos C, Kyritsis AP, Alexiou GA, Tzakos AG. (2024) A Novel Fluorescent Gemcitabine Prodrug That Follows a Nucleoside Transporter-Independent Internalization and Bears Enhanced Therapeutic Efficacy With Respect to Gemcitabine. Chemistry ,

Kefi M, Parasyris K, Balabanidou V, Sarafoglou C, Tsakireli D, Douris V, Monastirioti M, Maréchal J-D, Feyereisen R, Vontas J. (2024) Insights into unique features of Drosophila CYP4G enzymes. Insect Biochemistry and Molecular Biology ,

Papageorgiou M#, Filiou MD# (2024) Mitochondria dynamics and psychiatric disorders: The missing link. Neurosci Biobehav Rev ,

Messinis A*, Panteli E*, Paraskevopoulou A*, Zymarikopoulou AK*, Filiou MD# (2024) Altered lipidomics biosignatures in schizophrenia: a systematic review Schizophr Res ,

Thomou C*, Nussbaumer M*, Grammenou E*, Komini C, Vlaikou AM, Papageorgiou MP, Filiou MD# (2024) Early handling exerts anxiolytic effects and alters brain mitochondrial dynamics in adult high anxiety mice. Mol Neurobiol ,

Barreto-Domingos L, Müller-Kaastrup H, Rodrigues da Silva N, Filiou MD, Nielsen AL, Silveira Guimarães F, Wegerer G, Joca S. (2024) Cannabidiol effects on neuroplasticity markers and lipidome in the prefrontal cortex of a rat model fo depression. Neuropharmacology ,

Theodoridou D, Tsiantis CO, Vlaikou AM, Chondrou V, Zakopoulou V, Christodoulides P, Oikonomou ED, Tzimourta KD, Kοstoulas C, Tzallas AT, Tsamis KI, Peschos D, Sgourou A, Filiou MD, Syrrou M. (2024) Developmental dyslexia: insights from ΕEG-based findings and molecular signatures-a pilot study. Brain Sci ,

Papageorgiou MP*, Theodoridou D*, Nussbaumer M, Syrrou M, Filiou MD#. (2024) Deciphering the metabolome under stress: Insights from rodent models Curr Neuropharmacol ,

Goules, A. V. et al (2024) Identification and evolution of predictors of Sjögren's disease-associated mucosa-associated lymphoid tissue lymphoma development over time: a case-control study. The Lancet Rheumatology ,

Papagiannopoulos, O. D., Pezoulas, V. C., Papaloukas, C. & Fotiadis, D. I. (2024) 3D clustering of gene expression data from systemic autoinflammatory diseases using self-organizing maps (Clust3D). Computational and Structural Biotechnology Journal ,

Koloi, A. et al. (2024) Predicting early-stage coronary artery disease using machine learning and routine clinical biomarkers improved by augmented virtual data. European Heart Journal-Digital Health ,

Pezoulas, V. C. et al. (2024) Synthetic data generation methods in healthcare: A review on open-source tools and methods. Computational and Structural Biotechnology Journal ,

Zaridis, D. I. et al. (2024) ResQu-Net: Effective prostate’s peripheral zone segmentation leveraging the representational power of attention-based mechanisms. Biomedical Signal Processing and Control 93 ,

Lopez-Perez, L. et al. (2024) Statistical and machine learning methods for cancer research and clinical practice: A systematic review. Biomedical Signal Processing and Control ,

Zaridis, D. I. et al. (2024) ProLesA-Net: A multi-channel 3D architecture for prostate MRI lesion segmentation with multi-scale channel and spatial attentions. Patterns ,

Pezoulas, V. C. et al. (2024) FHBF: Federated hybrid boosted forests with dropout rates for supervised learning tasks across highly imbalanced clinical datasets. Patterns 5 ,

Kalliokoski T, Kettunen H, Kumpulainen E, Kettunen E, Thieulin-Pardo G, Neumann L, Thomsen M, Paul R, Malyutina A, Georgiadou M (2023) Discovery of novel methionine adenosyltransferase 2A (MAT2A) allosteric inhibitors by structure-based virtual screening. Bioorg Med Chem Lett , 10.1016/j.bmcl.2023.129450

Wong C, Tavares-Ferreira D, Thörn Perez C, Sharif B, Uttam S, Amiri M, Lister KC, Hooshmandi M, Nguyen V, Séguéla P, Sonenberg N, Price TJ, Gkogkas CG* and Khoutorsky A.* (2023) 4E-BP1-dependent translation in nociceptors controls mechanical hypersensitivity via TRIM32/type I interferon signaling. Sci Adv. , 10.1126/sciadv.adh9603. *co-last author

Hooshmandi M, Sharma V, Thörn Perez C, Sood R, Krimbacher K, Wong C, Lister KC, Ureña Guzmán A, Bartley TD, Rocha C, Maussion G, Nadler E, Roque PM, Gantois I, Popic J, Lévesque M, Kaufman RJ, Avoli M, Sanz E, Nader K, Hagerman RJ, Durcan TM, Costa-Mattioli M, Prager-Khoutorsky M, Lacaille JC, Martinez-Cerdeno V, Gibson JR, Huber KM, Sonenberg N*, Gkogkas CG*, Khoutorsky A*. (2023) Excitatory neuron-specific suppression of the integrated stress response contributes to autism-related phenotypes in fragile X syndrome. Neuron , 10.1016/j.neuron.2023.06.017 *co-last author

Chalkiadaki K., Statoulla E., Zafeiri M., Haji N., Lacaille J.C., Powell C.M., Jafarnejad S.M., Khoutorsky A., Gkogkas C. G. (2023) Reversal of memory and autism-related phenotypes in Tsc2+/- mice via inhibition of Nlgn1. Front Cell Dev Biol , 10.3389/fcell.2023.1205112

Patil S, Chalkiadaki K, Mergiya TF, Krimbacher K, Amorim IS, Akerkar S, Gkogkas CG*, Bramham CR*. (2023) eIF4E phosphorylation recruits β-catenin to mRNA cap and promotes Wnt pathway translation in dentate gyrus LTP maintenance. iScience , 10.1016/j.isci.2023.106649

Anadolu MN, Sun J, Kailasam S, Chalkiadaki K, Krimbacher K, Li JT, Markova T, Jafarnejad SM, Lefebvre F, Ortega J, Gkogkas CG, Sossin WS. (2023) Ribosomes in RNA Granules Are Stalled on mRNA Sequences That Are Consensus Sites for FMRP Association J Neurosci , 10.1523/JNEUROSCI.1002-22.2023

Vlataki K, Antonouli S, Kalyvioti C, Lampri E, Kamina S, Mauri D, Harissis HV, Magklara A. (2023) Circulating Tumor DNA in the Management of Early-Stage Breast Cancer. Cells 12(12) ,

Zorzompokou C., Ipeirotis M., Martzoukos M.K., Marangos, P. (correspondence). (2023) Detection of DNA Double-stranded Breaks in Mouse Oocytes. JoVE (J. Vis. Exp.) ,

O. Papagiannopoulos, K. Kourou, C. Papaloukas, ImmunAID Consortium, D.I. Fotiadis (2023) “Classification of Inflammation of Unknown Origin patients based on RNA-seq and SomaScan data” 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Conference (EMBC) ,

A. Koloi, V. Loukas, A. Sakellarios, J. Bosch, R. Quax, K. Nowakowska, J. Kamierski, C. Papaloukas, D.I. Fotiadis (2023) “A comparison study on creating simulated patient data for individuals suffering from chronic coronary disorders 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Conference (EMBC) ,

O.D. Papagiannopoulos, C. Papaloukas, D.I. Fotiadis (2023) “Deep Learning for Biomarkers Discovery in Auto-inflammatory Disorders” IEEE EMBS International Conference on Data Science and Engineering in Healthcare ,

Papadaki S, Magklara A. (2023) Regulation of Metabolic Plasticity in Cancer Stem Cells and Implications in Cancer Therapy. Cancers(Basel) , 10.3390/ cancers14235912

Kolb J, Tsata V, John N, Kim K, Möckel C, Rosso G, Kurbel V, Parmar A, Sharma G, Karandasheva K, Abuhattum S, Lyraki O, Beck T, Müller P, Schlüßler R, Frischknecht R, Wehner A, Krombholz N, Steigenberger B, Beis D, Takeoka A, Blümcke I, Möllmert S, Singh K, Guck J, Kobow K, Wehner D. (2023) Small leucine-rich proteoglycans inhibit CNS regeneration by modifying the structural and mechanical properties of the lesion environment. Nat Commun. ,

Giardoglou P, Deloukas P, Dedoussis G, Beis D. (2023) Cfdp1 Is Essential for Cardiac Development and Function. Cells , 10.3390/cells12151994

Maltabe VA, Melidoni AN, Beis D, Kokkinopoulos I, Paschalidis N, Kouklis P. (2023) VE-CADHERIN is expressed transiently in early ISL1+ cardiovascular progenitor cells and facilitates cardiac differentiation. Stem Cell Reports , 10.1016/j.stemcr.2023.07.002

Siatra P, Vatsellas G, Chatzianastasiou A, Balafas E, Manolakou T, Papapetropoulos A, Agapaki A, Mouchtouri ET, Ruchaya PJ, Korovesi AG, Mavroidis M, Thanos D, Beis D, Kokkinopoulos I. (2023) Return of the Tbx5; lineage-tracing reveals ventricular cardiomyocyte-like precursors in the injured adult mammalian heart. NPJ Regen Med , 10.1038/s41536-023-00280-9

Katsaros G, Giannoglou M, Chanioti S, Roufou S, Javaheri A, Mallia JO, Gatt J, Agalou A, Beis D, Valdramidis V. (2023) Production, characterization, microbial inhibition, and in vivo toxicity of cold atmospheric plasma activated water. Innovative Food Science and Emerging Technologies ,

Leonidis G, Koukiali A, Sigala I, Tsimaratou K, Beis D, Giannakouros T, Nikolakaki E, Sarli V. (2023) Synthesis and Anti-Angiogenic Activity of Novel c(RGDyK) Peptide-Based JH-VII-139-1 Conjugates. Pharmaceutics. , 10.3390/pharmaceutics15020381

O. Papagiannopoulos, K. Kourou, C. Papaloukas, D.I. Fotiadis (2022) “Comparison of High-Throughput Technologies in the Classification of Adult-Onset Still’s Disease Patients” 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) ,

V.C. Pezoulas, A. Liontos, E. Mylona, C. Papaloukas, O. Milionis, D. Biros, C. Kyriakopoulos, K. Kostikas, H. Milionis, D.I. Fotiadis (2022) “Predicting the need for mechanical ventilation and mortality in hospitalized COVID-19 patients who received heparin”, 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) ,

D. Katsarou, E.I. Georga, M. Christou, S. Tigas, C. Papaloukas, D.I. Fotiadis (2022) “Short Term Glucose Prediction in Patients with Type 1 Diabetes Mellitus” 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) ,

O.D. Papagiannopoulos, C. Papaloukas, V.C. Pezoulas, H.J.G. van de Werken, C. Poulet, Y.M. Mueller, P.D. Katsikis, D. de Seny, D.I. Fotiadis (2022) "Comparison of Proteomic Assay Methods in Autoinflammatory Disease Classification" IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) ,

V.C. Pezoulas, E. Mylona, C. Papaloukas, A. Liontos, D.I. Biros, O.I. Milionis, C. Kyriakopoulos, K. Kostikas, H. Milionis, D.I. Fotiadis (2022) "A hybrid approach based on dynamic trajectories to predict mortality in COVID-19 patients upon steroids administration", IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) ,

D.N. Katsarou, E.I. Georga, M. Christou, S. Tigas, C. Papaloukas, D.I. Fotiadis (2022) “An Exploratory Study of the Value of Vital Signs on the Short-term Prediction of Subcutaneous Glucose Concentration in Type 1 Diabetes – The GlucoseML Study” 16th EAI International Conference on Pervasive Computing Technologies for Healthcare (PervasiveHealth) ,

Kolliniati O, Ieronymaki E, Vergadi E, Tsatsanis C. (2022) Metabolic Regulation of Macrophage Activation J Innate Immun. [Abstract],

Pičulin M, Smole T, Žunkovič B, Kokalj E, Robnik-Šikonja M, Kukar M, Fotiadis DI, Pezoulas VC, Tachos NS, Barlocco F, Mazzarotto F, Popović D, Maier LS, Velicki L, Olivotto I, MacGowan GA, Jakovljević DG, Filipović N, Bosnić Z. (2022) Disease Progression of Hypertrophic Cardiomyopathy: Modeling Using Machine Learning JMIR Med Inform. [Abstract],

Gortsas TV, Tsinopoulos SV, Polyzos E, Pyl L, Fotiadis DI, Polyzos D. (2022) BEM evaluation of surface octahedral strains and internal strain gradients in 3D-printed scaffolds used for bone tissue regeneration J Mech Behav Biomed Mater. [Abstract],

Akay M, Subramaniam S, Brenan C, Bonato P, Waits CMK, Wheeler B, Fotiadis DII. (2022) Healthcare Innovations to Address the Challenges of the COVID-19 Pandemic IEEE J Biomed Health Inform. [Abstract],

Zaninello M, Palikaras K, Sotiriou A, Tavernarakis N, Scorrano L. (2022) Sustained intracellular calcium rise mediates neuronal mitophagy in models of autosomal dominant optic atrophy Cell Death Differ. [Abstract],

Mavridis K, Papapostolou KM, Riga M, Ilias A, Michaelidou K, Bass C, Van Leeuwen T, Tsagkarakou A, Vontas J. (2022) Multiple TaqMan qPCR and droplet digital PCR (ddPCR) diagnostics for pesticide resistance monitoring and management, in the major agricultural pest Tetranychus urticae Pest Manag Sci. [Abstract],

Papadimitriou F, Folia M, Ilias A, Papapetrou P, Roditakis E, Bass C, Vontas J, Margaritopoulos JT. (2022) Flupyradifurone resistance in Myzus persicae populations from peach and tobacco in Greece Pest Manag Sci. [Abstract],

Politou AS, Pastore A, Temussi PA. (2022) An 'onion-like' model of protein unfolding: collective versus site specific approaches Chemphyschem. [Abstract],

Peuhu E, Jacquemet G, Scheele CLGJ, Isomursu A, Laisne MC, Koskinen LM, Paatero I, Thol K, Georgiadou M, Guzmán C, Koskinen S, Laiho A, Elo LL, Boström P, Hartiala P, van Rheenen J, Ivaska J. (2022) MYO10-filopodia support basement membranes at pre-invasive tumor boundaries. Dev Cell ,

Nauen R, Bass C, Feyereisen R, Vontas J. (2022) The Role of Cytochrome P450s in Insect Toxicology and Resistance Annu Rev Entomol. [Abstract],

Kardassis D, Thymiakou E, Chroni A. (2022) Genetics and regulation of HDL metabolism Biochim Biophys Acta Mol Cell Biol Lipids. [Abstract],

Sertedakis M, Kotsaridis K, Tsakiri D, Mermigka G, Dominguez-Ferreras A, Ntoukakis V, Sarris PF. (2022) Expression of putative effectors of different Xylella fastidiosa strains triggers cell death-like responses in various Nicotiana model plants Mol Plant Pathol. [Abstract],

Yang W, Feiner N, Salvi D, Laakkonen H, Jablonski D, Pinho C, Carretero MA, Sacchi R, Zuffi MAL, Scali S, Plavos K, Pafilis P, Poulakakis N, Lymberakis P, Jandzik D, Schulte U, Aubret F, Badiane A, Perez I de Lanuza G, Abalos J, While GM, Uller T. (2022) Population genomics of wall lizards reflects the dynamic history of the Mediterranean Basin Mol Biol Evol. [Abstract],

Maltabe V, Kouklis P. (2022) Vascular Endothelial (VE)-Cadherin-mediated Adherens Junctions involvement in cardiovascular progenitor cell specification Int J Dev Biol. [Abstract],

Valanti EK, Dalakoura-Karagkouni K, Fotakis P, Vafiadaki E, Mantzoros CS, Chroni A, Zannis V, Kardassis D, Sanoudou D. (2022) Reconstituted HDL-apoE3 promotes endothelial cell migration through ID1 and its downstream kinases ERK1/2, AKT and p38 MAPK Metabolism. [Abstract],

Katsarou K, Kryovrysanaki N, Kalantidis K. (2022) Detection of Viroid RNA and vd-siRNA in N. benthamiana Plants: Northern Blot Analyses for Viroid and vd-siRNAs Methods Mol Biol. [Abstract],

Chalmantzi V, Simitzi C, Papadopoulos A, Bagli E, Murphy C, Stratakis E, Fotsis T. (2022) Culturing Human Pluripotent Stem Cells on Micropatterned Silicon Surfaces Methods Mol Biol. [Abstract],

Deli A, Tympa LE, Moschou PN. (2022) Analyses of Protein Turnover at the Cell Plate by Fluorescence Recovery After Photobleaching During Cytokinesis Methods Mol Biol. [Abstract],

Porretta D, Mastrantonio V, Lucchesi V, Bellini R, Vontas J, Urbanelli S. (2022) Historical samples reveal a combined role of agriculture and public health applications in vector resistance to insecticides Pest Manag Sci. [Abstract],

Papapostolou KM, Riga M, Samantsidis GR, Skoufa E, Balabanidou V, Van Leeuwen T, Vontas J. (2022) Over-expression in cis of the midgut P450 CYP392A16 contributes to abamectin resistance in Tetranychus urticae Insect Biochem Mol Biol. [Abstract],

Pezoulas VC, Kourou KD, Mylona E, Papaloukas C, Liontos A, Biros D, Milionis OI, Kyriakopoulos C, Kostikas K, Milionis H, Fotiadis DI. (2022) ICU admission and mortality classifiers for COVID-19 patients based on subgroups of dynamically associated profiles across multiple timepoints Comput Biol Med. [Abstract],

Erden A, Apaydın H, Fanouriakis A, Güven SC, Armagan B, Akyüz Dağlı P, Konak HE, Polat B, Atalar E, Esmer S, Karakaş Ö, Özdemir B, Eksin MA, Omma A, Kücüksahin O, Bertsias GK, Boumpas DT. (2022) Performance of the systemic lupus erythematosus risk probability index in a cohort of undifferentiated connective tissue disease Rheumatology (Oxford). [Abstract],

Kostopoulou M, Fanouriakis A, Bertsias G, Boumpas DT. (2022) Treatment of lupus: more options after a long wait Ann Rheum Dis. [Abstract],

Ploumi C, Papandreou ME, Tavernarakis N. (2022) The complex interplay between autophagy and cell death pathways Biochem J. [Abstract],

London E, Stratakis CA. (2022) The regulation of PKA signaling in obesity and in the maintenance of metabolic health Pharmacol Ther. [Abstract],

Konstantinidis G, Tavernarakis N. (2022) Autophagy of the Nucleus in Health and Disease Front Cell Dev Biol. [Abstract],

Katsavou E, Riga M, Ioannidis P, King R, Zimmer CT, Vontas J. (2022) Functionally characterized arthropod pest and pollinator cytochrome P450s associated with xenobiotic metabolism Pestic Biochem Physiol. [Abstract],

Samantsidis GR, Denecke S, Swevers L, Skavdis G, Geibel S, Vontas J. (2022) Identification of Helicoverpa armigera promoters for biotechnological applications Insect Biochem Mol Biol. [Abstract],

Vlachoyiannopoulos PG, Chatzis LG, Goules AV, Argyropoulou OD, Englezopoulou A, Stergiou I, Voulgarelis M, Tsanakas P, Exarchos T, Gorgoulis VV, Fotiadis DI, Tzioufas AG. (2022) Patient-centered approaches for patients with systemic autoimmune rheumatic diseases: development and evolution Expert Rev Clin Immunol. [Abstract],

Katsarou K, Adkar-Purushothama CR, Tassios E, Samiotaki M, Andronis C, Lisón P, Nikolaou C, Perreault JP, Kalantidis K. (2022) Revisiting the Non-Coding Nature of Pospiviroids Cells. [Abstract],

Lionaki E, Ploumi C, Tavernarakis N. (2022) One-Carbon Metabolism: Pulling the Strings behind Aging and Neurodegeneration Cells. [Abstract],

Katsara K, Psatha K, Kenanakis G, Aivaliotis M, Papadakis VM. (2022) Subtyping on Live Lymphoma Cell Lines by Raman Spectroscopy Materials (Basel). [Abstract],

Kostopoulou M, Ugarte-Gil MF, Pons-Estel B, van Vollenhoven RF, Bertsias G. (2022) The association between lupus serology and disease outcomes: A systematic literature review to inform the treat-to-target approach in systemic lupus erythematosus Lupus. [Abstract],

Ntali S, Nikolopoulos D, Pantazi L, Emmanouilidou E, Papagoras C, Fanouriakis A, Dimopoulou D, Kallitsakis I, Boki K, Dania V, Sidiropoulos PI, Boumpas DT, Bertsias G. (2022) Remission or low disease activity at pregnancy onset are linked to improved foetal outcomes in women with systemic lupus erythematosus: results from a prospective observational study Clin Exp Rheumatol. [Abstract],

Pezoulas VC, Goules A, Kalatzis F, Chatzis L, Kourou KD, Venetsanopoulou A, Exarchos TP, Gandolfo S, Votis K, Zampeli E, Burmeister J, May T, Marcelino Pérez M, Lishchuk I, Chondrogiannis T, Andronikou V, Varvarigou T, Filipovic N, Tsiknakis M, Baldini C, (2022) Addressing the clinical unmet needs in primary Sjögren's Syndrome through the sharing, harmonization and federated analysis of 21 European cohorts Comput Struct Biotechnol J. [Abstract],

Naoumi N, Michaelidou K, Papadakis G, Simaiaki AE, Fernández R, Calero M, Arnau A, Tsortos A, Agelaki S, Gizeli E. (2022) Acoustic Array Biochip Combined with Allele-Specific PCR for Multiple Cancer Mutation Analysis in Tissue and Liquid Biopsy ACS Sens. [Abstract],

Lionaki E, Gkikas I, Daskalaki I, Ioannidi MK, Klapa MI, Tavernarakis N. (2022) Mitochondrial protein import determines lifespan through metabolic reprogramming and de novo serine biosynthesis Nat Commun. [Abstract],

Luong HNB, Kalogeridi M, Vontas J, Denecke S. (2022) Using tissue specific P450 expression in Drosophila melanogaster larvae to understand the spatial distribution of pesticide metabolism in feeding assays Insect Mol Biol. [Abstract],

Iatridis N, Kougioumtzi A, Vlataki K, Papadaki S, Magklara A. (2022) Anti-Cancer Properties of Stevia rebaudiana; More than a Sweetener Molecules. [Abstract], 10.3390/molecules27041362

Filiou MD, Teplytska L, Nussbaumer M, Otte DM, Zimmer A, Turck CW. (2022) Multi-Omics Analysis Reveals Myelin, Presynaptic and Nicotinate Alterations in the Hippocampus of G72/G30 Transgenic Mice J Pers Med. [Abstract],

Tsiomita S, Liveri EM, Vardaka P, Vogiatzi A, Skiadaresis A, Saridis G, Tsigkas I, Michaelidis TM, Mavrothalassitis G, Thyphronitis G. (2022) ETS2 repressor factor (ERF) is involved in T lymphocyte maturation acting as regulator of thymocyte lineage commitment J Leukoc Biol. [Abstract],

Pailas A, Niaka K, Zorzompokou C, Marangos P. (2022) The DNA Damage Response in Fully Grown Mammalian Oocytes Cells. [Abstract],

Ioannidis P, Buer B, Ilias A, Kaforou S, Aivaliotis M, Orfanoudaki G, Douris V, Geibel S, Vontas J, Denecke S. (2022) A spatiotemporal atlas of the lepidopteran pest Helicoverpa armigera midgut provides insights into nutrient processing and pH regulation BMC Genomics. [Abstract],

Liu D, Nanclares C, Simbriger K, Fang K, Lorsung E, Le N, Amorim IS, Chalkiadaki K, Pathak SS, Li J, Gewirtz JC, Jin VX, Kofuji P, Araque A, Orr HT, Gkogkas CG, Cao R. (2022) Autistic-like behavior and cerebellar dysfunction in Bmal1 mutant mice ameliorated by mTORC1 inhibition Mol Psychiatry. [Abstract],

Turck CW, Webhofer C, Reckow S, Moy J, Wang M, Guillermier C, Poczatek JC, Filiou MD. (2022) Antidepressant treatment effects on hippocampal protein turnover: Molecular and spatial insights from mass spectrometry Proteomics. [Abstract],

Tansley S, Gu N, Guzmán AU, Cai W, Wong C, Lister K, Muñoz-Pino E, Yousefpour N, Roome RB, Heal J, Wu N, Castonguay A, Lean G, Muir EM, Kania A, Prager-Khoutorsky M, Zhang J, Gkogkas CG, Fawcett JW, Diatchenko L, Ribeiro-da-Silva A, De Koninck Y, Mogil JS (2022) Microglia-mediated degradation of perineuronal nets promotes pain Science. [Abstract],

van den Hoogen IJ, Schultz J, Kuneman JH, de Graaf MA, Kamperidis V, Broersen A, Jukema JW, Sakellarios A, Nikopoulos S, Kyriakidis S, Naka KK, Michalis L, Fotiadis DI, Maaniitty T, Saraste A, Bax JJ, Knuuti J. (2022) Detailed behaviour of endothelial wall shear stress across coronary lesions from non-invasive imaging with coronary computed tomography angiography Eur Heart J Cardiovasc Imaging. [Abstract],

Tadatsu M, Sakashita R, Panteleri R, Douris V, Vontas J, Shimotsuma Y, Ishida T, Sudo M, Van Leeuwen T, Osakabe M. (2022) A mutation in chitin synthase I associated with etoxazole resistance in the citrus red mite Panonychus citri (Acari: Tetranychidae) and its uneven geographic distribution in Japan Pest Manag Sci. [Abstract],

Kigka VI, Georga E, Tsakanikas V, Kyriakidis S, Tsompou P, Siogkas P, Michalis LK, Naka KK, Neglia D, Rocchiccioli S, Pelosi G, Fotiadis DI, Sakellarios A. (2022) Machine Learning Coronary Artery Disease Prediction Based on Imaging and Non-Imaging Data Diagnostics (Basel). [Abstract],

Androutsakos T, Voulgaris TA, Bakasis AD, Koutsompina ML, Chatzis L, Argyropoulou OD, Pezoulas V, Fotiadis DI, Papatheodoridis G, Tzioufas AG, Goules AV. (2022) Liver Fibrosis in Primary Sjögren's Syndrome Front Immunol. [Abstract],

Ktistakis E, Skaramagkas V, Manousos D, Tachos NS, Tripoliti E, Fotiadis DI, Tsiknakis M. (2022) COLET: A dataset for COgnitive workLoad estimation based on eye-tracking Comput Methods Programs Biomed. [Abstract],

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Fotsis, T., Pepper, M., Adlercreutz, H., Hase, T., Montesano, R., and Schweigerer, L. (1995) Genistein, a dietary ingested isoflavonoid, inhibits cell proliferation and in vitro angiogenesis. J. Nutr. ,

Adlercreutz, H.T., Goldin, B.R., Gorbach, S.L., Höckerstedt, K.A.V., Watanabe, S., Hämäläinen, E.K., Markkanen, M.H., Mäkelä, T.H., Wähälä, K.T., Hase, T.A. and Fotsis, T. (1995) Soybean phytoestrogen intake and cancer risk. J. Nutr. ,

Adlercreutz, H., Fotsis, T., Kurzer,M., Wähälä, K., Mäkelä,T., and Hase, T. (1995) Isotope dilution gas chromatographic-mass spectrometric method for the determination of unconjugated lignans and isoflavonoids in human feces, with preliminary results in omnivorous and vegetarian women. Analytical Biochemistry ,

Adlercreutz,H., van der Wildt, J., Kinzel, J., Attala, H., Wähälä, K., Mäkelä,T., Hase, T., and Fotsis, T. (1995) Lignan and isoflavonoid conjugates in human urine J. Steroid Biochem. Mol. Biol. ,

Christoforidis S, Papamarcaki T, Galaris D, Kellner R, and Tsolas O (1995) Purification and properties of human placental ATP diphosphohydrolase Eur J Biochem ,

Adlercreutz, H., Fotsis, T., Watanabe, S., Lampe, J.,Wähälä, K., Mäkelä,T., and Hase, T. (1994) Determination of lignans and isoflavonoids in plasma by isotope dilution gas chromatograohy-mass spectrometry. Cancer Detection and Prevention ,

Adlercreutz,H., Gorbach,S.L., Goldin, B.R., Woods, M.N., Dwyer, J.T., Höckerstedt, K.A.V., Wähälä, K.T., Hase, T., Hämäläinen, E.K., and Fotsis, T. (1994) Diet and urinary profile in various populations. A preliminary report. Polycyclic Aromatic Compounds ,

Fotsis, T., Zhang, Y., Pepper, M.S., Adlercreutz, H., Montesano, R., Nawroth, P.P., and Schweigerer, L. (1994) The endogenous oestrogen metabolite 2-methoxyestradiol inhibits angiogenesis and suppresses tumour growth. Nature ,

P. D. Kouklis, E. Hutton, and E. Fuchs (1994) Making a connection: Direct binding between keratin intermediate filaments and desmosomal proteins. J. Cell Biol. 127 ,

Shashidharan, P., T. M. Michaelidis, N. K. Robakis, A. Kretsovali, J. Papamatheakis, and A. Plaitakis. (1994) Novel human glutamate dehydrogenase expressed in neural and testicular tissues and encoded by an X-linked intronless gene. J. Biol. Chem. ,

Lecanidou R, Douris V and Rodakis GC (1994) Novel features of metazoan mtDNA revealed from sequence analysis of three mitochondrial DNA segments of the land snail Albinaria turrita (Gastropoda: Clausiliidae). Journal of Molecular Evolution ,

Fackelmayer, F.O., Dahm, K., Renz, A., Ramsperger, U. & Richter, A. (1994) Nucleic-acid-binding properties of hnRNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro. Eur. J. Biochem ,

Fackelmayer, F.O. & Richter, A. (1994) Purification of two isoforms of hnRNP-U and characterization of their nucleic acid binding activity. Biochemistry ,

Fackelmayer, F.O. & Richter, A. (1994) hnRNP-U/SAF-A is encoded by two differentially polyadenylated mRNAs in human cells. Biochim. Biophys. Acta ,

Romig, H., Ruff, J., Fackelmayer, F.O., Patil, M.S. & Richter, A. (1994) Characterisation of two intronic nuclear-matrix-attachment regions in the human DNA topoisomerase I gene. Eur. J. Biochem. ,

Johannessen, G. C, Adlerceutz, H., Fotsis, T., and Lonning, E. (1993) Plasma and urinary oestrogens in breast cancer patients on treatmnet with 4-hydroxyandrostenedione. Brit. J. Cancer ,

Adlercreutz, H., Fotsis, T., Lampe, J., Wähälä, K., Mäkelä, T., Brunow, G., and Hase, T. (1993) Quantitative determination of lignans and isoflavonoids in plasma of omnivorous and vegetarian women by isotope dilution gas chromatography-mass spectrometry. Scand. J. Clin. Lab. Invest. ,

Fotsis, T., Pepper, M., Adlercreutz, H., Fleischmann, G., Hase, T., Montesano, R. and Schweigerer, L. (1993) Genistein, a dietary-derived inhibitor of in vitro angiogenesis. Proc. Natl. Acad. Sci. ,

P. D. Kouklis, M. Hatzfeld, M. Brunkener, K. Weber, and S. D. Georgatos. (1993) In vitro assembly properties of vimentin mutagenised at the beta-site tail motif J. Cell Sci. ,

P. D. Kouklis , A. Merdes, T. Papamarcaki, and S. D. Georgatos. (1993) Transient arrest of 3T3 cells in mitosis and inhibition of nuclear lamina reassembly around chromatin induced by an anti- vimentin antibodies. Eur. J. Cell Biol. ,

M. B. McCormick, P. D. Kouklis, D. Syder, and E. Fuchs. (1993) The roles of the rod end and the tail in vimentin IF assembly and IF network formation. J. Cell Biol. ,

Michaelidis, T. M., G. Tzimagiorgis, N. Moschonas, and J. Papamatheakis. (1993) The human glutamate dehydrogenase gene family: gene organization and structural characterization. Genomics ,

Tsiotra, C. P., D. Karagogeos, K. Theodorakis, T. M. Michaelidis, W. S. Modi, J. A. Furley, T. M. Jessell, and J. Papamatheakis. (1993) Isolation of the cDNA and chromosomal localization of the gene (TAX1) encoding the human axonal glycoprotein TAG-1 Genomics ,

Schweigerer, L., Christeleit, K., Fleischmann, G., Adlercreutz, H., Wähälä, K., Hase, T., Schwab, M., Ludwig, R., and Fotsis, T. (1992) Identification in human urine of a natural growth inhibitor for cells derived from solid pediatric tumours. Eur. J. Clin. Invest. ,

Schweigerer, L., and Fotsis, T. (1992) Angiogenesis and angiogenesis inhibitors in pediatric diseases. Eur. J. Pediatr. ,

P. D. Kouklis, P. Traub, and S. D. Georgatos. (1992) Involvement of the consensus sequence motif at coil 2b in the assembly and stability of vimentin filaments. J. Cell Sci. ,

Romig, H., Fackelmayer, F.O., Renz, A., Ramsperger, U. & Richter, A. (1992) Characterization of SAF-A, a novel nuclear DNA binding protein from HeLa cells with high affinity for nuclear matrix/scaffold attachment DNA elements. EMBO J. ,

Schweigerer. L., and Fotsis, T. (1991) Erhöhte Expression des MYCN Ongogens in humanen Neuroblastomzellen und mögliche, neue Therapie-Ansätze. Klin. Pädiatr. ,

Adlercreutz, H., Honjo, H., Higashi, A., Fotsis, T., Hämäläinen, E., Hasegawa, T., and Okada, H. (1991) Urinary excretion of lignans and isoflavonoid phytoestrogens in Japanese men and women consuming a traditional Japanese diet. Am. J. Clin. Nutr. ,

Adlercreutz, H., Fotsis, T., Bannwart, C., Wähälä, K., Brunow, G., and Hase, T. (1991) Isotope dilution gas chromatographic-mass spectrometric method for the determination of lignans and isoflavonoids in human urine, including identification of genistein. Clin. Chem. Acta. ,

Hämäläinen, E.,Fotsis, T., and Adlercreutz, H. (1991) A gas chromatographic method for the determination of neutral profiles in urine, including studies on the effect of oxytetracycline administration on these men. Clin. Chim. Acta ,

Rosenberger RF, Gounaris EG, Kolettas E. (1991) Mechanisms responsible for the limited and immortal phenotype in cultured mammalian cells. J. Theor. Biol. ,

P. D. Kouklis, T. Papamarcaki, A. Merdes, and S. D. Georgatos. (1991) A potential role for the COOH-terminal domain in the lateral packing of type III intermediate filaments. J. Cell Biol. ,

T. Papamarcaki, P. D. Kouklis, T. Kreis, and S. D. Georgatos. (1991) The “lamin B- fold” J. Biol. Chem. ,

Schweigerer, L., Scheurich, P., and Fotsis, T. (1990) Enhanced MYCN oncogene expression in human neuroblastoma cells results in increased susceptibility to growth inhibition by TNFa. Biochem. Biophys. Res. Commun. ,

Fotsis, T., Murphy, C., and Gannon, F. (1990) Nucleotide sequence of the bovine insulin-like growth factor I (IGF-I) and its IGF-IA precursor. Nucl. Acids Res. ,

Adlercreutz, H., Fotsis, T., Höckerstedt, K., Hämäläinen, E., Bannwart, C., Bloigu, S., Valtonen, A., and Ollus (1989) Diet and urinary estrogen profile in premenopausal omnivorous and vegetarian women and in premenopausal women with breast cancer J. Steroid Biochem. ,

Murphy, C., Fotsis, T., Pantzar, P., Adlercreutz, H., and Martin, F. (1987) Analysis of tamoxifen, N-desmethyltamoxifen and 4-hydroxytamoxifen levels in cytosol and KCl-nuclear extracts of breast tumours from tamoxifen treated patients by gas chromatography-mass spectrometry (GC-MS) using selected ion monitoring (SIM). J. Steroid Biochem. ,

Murphy, C., Fotsis, T., Adlercreutz, H., and Martin, F. (1987) Analysis of tamoxifen and 4-hydroxytamoxifen levels in immature rat uterine cytoplasm and KCL-nucler extracts by gas chromatography-mass spectrometry (GC-MS) using selected ion monitoring (SIM). J. Steroid Biochem. ,

Fotsis, T. (1987) The multicomponent analysis of estrogens in urine by ion exchange chromatography and GC-MS -II. Fractionation and quantitation of the main groups of estrogen conjugates. J. Steroid Biochem. ,

Fotsis, T., and Adlercreutz, H. (1987) The multicomponent analysis of estrogens in urine by ion exchange chromatography and GC-MS -I. Quantitation of estrogens after initial hydrolysis ofconjugates. J. Steroid Biochem ,

Fotsis, T., Shah, H.P., Härkönen, M., and Adlercreutz, H. (1987) Fluoroenzymatic cycling assay (FECA) for the determination of catechol estrogen monomethyl ethers in human urine. Neurochemical Research ,

Adlercreutz, H., Höckerstedt, K., Bannwart, C., Bloigu, S.,Hämäläinen, E., Fotsis, T., and Ollus, A. (1987) Effect of dietary components, including lignans and phytoestrogens, on enterohepatic circulation and liver metabolism of estrogens and on sex hormone binding globulin (SHBG). J. Steroid Biochem. ,

Murphy, C., Fotsis, T., Pantzar, P., Adlercreutz, H., and Martin, F. (1987) Analysis of tamoxifen and its metabolites in human plasma by gas chromatography-mass spectrometry (GC-MS) using selected ion monitoring (SIM). J. Steroid Biochem. ,

Adlercreutz, H., Fotsis, T., Bannwart, C., Wähälä, K., Mäkelä, T., Brunow, G., and Hase, T. (1986) Determination of urinary lignans and phytoestrogen metabolites, potential antiestrogens and anticarcinogens,in urine of women on various habitual diets. J. Steroid Biochem. ,

Korpela, J.T., Fotsis, T., and Adlercreutz, H. (1986) Multicomponent analysis of bile acids in faeces by anion exchange and capillary column gas-liquid chromatography; application in oxytetracycline treated subjects. J. Steroid Biochem. ,

Adlercreutz, H., Musey, P.I., Fotsis, T., Bannwart, C.,Wähälä, K., Mäkelä, T., Brunow, G., and Hase, T. (1986) Identification of lignans and phytoestrogens in urine of chimpanzees. Clin. Chim. Acta ,

Adlercreutz, H., Fotsis, T, Bannwart, C., Hämäläinen, E.K.,Bloigu, S., and Ollus, A. (1986) Urinary estrogen profile determination in young Finnish vegetarian and omnivorous women. J. Steroid Biochem. ,

Bannwart, C., Adlercreutz, H., Fotsis, T., Wähälä, K., Hase, T., and Brunow, G. (1984) Identification of O-desmethylangolesin, a metabolite of daidzein, and of metairesinol, one likely plant precursor of the animal lignan enterolactone, in human urine. Finn. Chem. Lett. ,

Hämäläinen, E.K., Fotsis, T., and Adlercreutz, H. (1984) Rapid and reliable separation of 5a-dihydrotestosterone from testosterone on silica gel microcolumns. Clin. Chim. Acta ,

Bannwart, C., Fotsis, T., Heikkinen, R., and Adlercreutz,H. (1984) Identification of the isoflavonic phytoestrogen daidzeinin human urine. Clin. Chim. Acta ,

Antila, E., Fotsis, T., Wartiovaara, J., and Adlercreutz, H. (1983) Steroid metabolism in human teratocarcinoma cell line PA1. J. Steroid Biochem. ,

Heikkinen, R., Fotsis, T., and Adlercreutz, H. (1983) Use of ion exchange chromatography in steroid analysis. J. Steroid Biochem. ,

Fotsis, T., and Heikkinen, R. (1983) Selective chromatographic fractionation of catechol estrogens on anion exchangers in borate form. J. Steroid Biochem. ,

Adlercreutz, H., Fotsis, T., Heikkinen, R., Dwyer, J.T., Woods, M., Goldin, B.R., and Gorbach, S.L.. (1982) Excretion of the lignans, enterolactone and enterodiol, and of equol in omnivorous and vegetarian postmenopausal women and in breast cancer. Lancet ,

Fotsis, T., Heikkinen, R., Adlercreutz, H., Axelson, M., and Setchell, K.D.R. (1982) Capillary gas chromatographic method for the analysis of lignans in human urine. Clin. Chim. Acta ,

Adlercreutz, H., Fotsis, T., Heikkinen, R., Dwyer, J.T., Goldin, B.R., Gorbach, S.L., Lawson, A.M., and Setchell, K.D.R. (1981) Diet and urinary excretion of lignans in female subjects. Medical Biology ,

Heikkinen, R., Fotsis, T., and Adlercreutz, H. (1981) Reversed phase C18 cartridge for extraction of estrogens from urine and plasma. Clin. Chem. ,

Fotsis, T., Adlercreutz, H., Järvenpää, P., Setchell, K.D.R., Axelson, M., and Sjövall, J. (1981) Group separation of steroid conjugates by DEAE-Sephadex anion exchange chromatography. J. Steroid Biochem. ,

Fotsis, T., Järvenpää, P., and Adlercreutz, H. (1980) Identification of 4-hydroxyestriol in pregnancy urine. J. Clin.Endocrinol. Metab ,

Järvenpää, P., Kosunen, T., Fotsis, T., and Adlercreutz, H. (1980) In vitro metabolism of estrogens by isolated intestinal micro-organisms and by human fecal microflora. J. Steroid Biochem ,

Fotsis, T., Järvenpää, P., and Adlercreutz, H. (1980) Purification of urine for quantification of the complete estrogen profile. J. Steroid Biochem. ,

Järvenpää, P., Fotsis, T., and Adlercreutz, H. (1979) Ion exchange purification of estrogens. J. Steroid Biochem. ,

Adlercreutz, H., Martin, F., Järvenpää, P., and Fotsis, T (1979) Steroid adsorption and enterohepatic recycling. Contraception ,

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