Research

E. Baltzi C. Papaloukas D.A. Spandidos, I. Michalopoulos (2024) “Genes encoding γ‑glutamyl‑transpeptidases in the allicin biosynthetic pathway in garlic (Allium sativum)” Biomedical Reports ,

Papagiannopoulos, O. D., Pezoulas, V. C., Papaloukas, C. & Fotiadis, D. I. (2024) 3D clustering of gene expression data from systemic autoinflammatory diseases using self-organizing maps (Clust3D). Computational and Structural Biotechnology Journal ,

Zaridis, D. I. et al. (2024) ResQu-Net: Effective prostate’s peripheral zone segmentation leveraging the representational power of attention-based mechanisms. Biomedical Signal Processing and Control 93 ,

Zaridis, D. I. et al. (2024) ProLesA-Net: A multi-channel 3D architecture for prostate MRI lesion segmentation with multi-scale channel and spatial attentions. Patterns ,

O. Papagiannopoulos, K. Kourou, C. Papaloukas, ImmunAID Consortium, D.I. Fotiadis (2023) “Classification of Inflammation of Unknown Origin patients based on RNA-seq and SomaScan data” 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Conference (EMBC) ,

A. Koloi, V. Loukas, A. Sakellarios, J. Bosch, R. Quax, K. Nowakowska, J. Kamierski, C. Papaloukas, D.I. Fotiadis (2023) “A comparison study on creating simulated patient data for individuals suffering from chronic coronary disorders 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Conference (EMBC) ,

O.D. Papagiannopoulos, C. Papaloukas, D.I. Fotiadis (2023) “Deep Learning for Biomarkers Discovery in Auto-inflammatory Disorders” IEEE EMBS International Conference on Data Science and Engineering in Healthcare ,

Siatra P, Vatsellas G, Chatzianastasiou A, Balafas E, Manolakou T, Papapetropoulos A, Agapaki A, Mouchtouri ET, Ruchaya PJ, Korovesi AG, Mavroidis M, Thanos D, Beis D, Kokkinopoulos I. (2023) Return of the Tbx5; lineage-tracing reveals ventricular cardiomyocyte-like precursors in the injured adult mammalian heart. NPJ Regen Med , 10.1038/s41536-023-00280-9

O. Papagiannopoulos, K. Kourou, C. Papaloukas, D.I. Fotiadis (2022) “Comparison of High-Throughput Technologies in the Classification of Adult-Onset Still’s Disease Patients” 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) ,

V.C. Pezoulas, A. Liontos, E. Mylona, C. Papaloukas, O. Milionis, D. Biros, C. Kyriakopoulos, K. Kostikas, H. Milionis, D.I. Fotiadis (2022) “Predicting the need for mechanical ventilation and mortality in hospitalized COVID-19 patients who received heparin”, 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) ,

D. Katsarou, E.I. Georga, M. Christou, S. Tigas, C. Papaloukas, D.I. Fotiadis (2022) “Short Term Glucose Prediction in Patients with Type 1 Diabetes Mellitus” 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) ,

O.D. Papagiannopoulos, C. Papaloukas, V.C. Pezoulas, H.J.G. van de Werken, C. Poulet, Y.M. Mueller, P.D. Katsikis, D. de Seny, D.I. Fotiadis (2022) "Comparison of Proteomic Assay Methods in Autoinflammatory Disease Classification" IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) ,

V.C. Pezoulas, E. Mylona, C. Papaloukas, A. Liontos, D.I. Biros, O.I. Milionis, C. Kyriakopoulos, K. Kostikas, H. Milionis, D.I. Fotiadis (2022) "A hybrid approach based on dynamic trajectories to predict mortality in COVID-19 patients upon steroids administration", IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) ,

D.N. Katsarou, E.I. Georga, M. Christou, S. Tigas, C. Papaloukas, D.I. Fotiadis (2022) “An Exploratory Study of the Value of Vital Signs on the Short-term Prediction of Subcutaneous Glucose Concentration in Type 1 Diabetes – The GlucoseML Study” 16th EAI International Conference on Pervasive Computing Technologies for Healthcare (PervasiveHealth) ,

Akay M, Subramaniam S, Brenan C, Bonato P, Waits CMK, Wheeler B, Fotiadis DII. (2022) Healthcare Innovations to Address the Challenges of the COVID-19 Pandemic IEEE J Biomed Health Inform. [Abstract],

Pezoulas VC, Kourou KD, Mylona E, Papaloukas C, Liontos A, Biros D, Milionis OI, Kyriakopoulos C, Kostikas K, Milionis H, Fotiadis DI. (2022) ICU admission and mortality classifiers for COVID-19 patients based on subgroups of dynamically associated profiles across multiple timepoints Comput Biol Med. [Abstract],

Mourtzi T, Dimitrakopoulos D, Kakogiannis D, Salodimitris C, Botsakis K, Meri DK, Anesti M, Dimopoulou A, Charalampopoulos I, Gravanis A, Matsokis N, Angelatou F, Kazanis I. (2021) Characterization of substantia nigra neurogenesis in homeostasis and dopaminergic degeneration: beneficial effects of the microneurotrophin BNN-20 Stem Cell Res Ther. [Abstract],

Kontaki H, Koukaki M, Vasilarou M, Giakountis A, Deligianni E, Luo X, Kim Y, Talianidis I. (2021) Targeting Smyd3 by next-generation antisense oligonucleotides suppresses liver tumor growth iScience. [Abstract],

Pezoulas VC, Grigoriadis GI, Gkois G, Tachos NS, Smole T, Bosnić Z, Pičulin M, Olivotto I, Barlocco F, Robnik-Šikonja M, Jakovljevic DG, Goules A, Tzioufas AG, Fotiadis DI. (2021) A computational pipeline for data augmentation towards the improvement of disease classification and risk stratification models: A case study in two clinical domains Comput Biol Med. [Abstract],

Pezoulas VC, Papaloukas C, Veyssiere M, Goules A, Tzioufas AG, Soumelis V, Fotiadis DI. (2021) A computational workflow for the detection of candidate diagnostic biomarkers of Kawasaki disease using time-series gene expression data Comput Struct Biotechnol J. [Abstract],

Ashour AS, Asran M, Mohamed WS, Fotiadis DI. (2021) Optimal Localization of a Novel Shifted 1T-Ring Based Microwave Ablation Probe in Hepatocellular Carcinoma IEEE Trans Biomed Eng. [Abstract],

A. Koloi, A.I. Sakellarios, V.C. Pezoulas, C. Papaloukas, M. Kleber, W. März, D.I. Fotiadis (2021) "Coronary Artery Stenosis Prediction using Machine Learning Algorithms", IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) ,

Kostikis N, Rigas G, Konitsiotis S, Fotiadis DI. (2021) Configurable Offline Sensor Placement Identification for a Medical Device Monitoring Parkinson's Disease Sensors (Basel). [Abstract],

Tachmatzidi EC, Galanopoulou O, Talianidis I. (2021) Transcription Control of Liver Development Cells. [Abstract],

Siogkas PK, Lakkas L, Sakellarios AI, Rigas G, Kyriakidis S, Stefanou KA, Anagnostopoulos CD, Clemente A, Rocchiccioli S, Pelosi G, Parodi O, Papafaklis MI, Naka KK, Michalis LK, Neglia D, Fotiadis DI. (2021) SmartFFR, a New Functional Index of Coronary Stenosis: Comparison With Invasive FFR Data Front Cardiovasc Med. [Abstract],

Plati DK, Tripoliti EE, Bechlioulis A, Rammos A, Dimou I, Lakkas L, Watson C, McDonald K, Ledwidge M, Pharithi R, Gallagher J, Michalis LK, Goletsis Y, Naka KK, Fotiadis DI. (2021) A Machine Learning Approach for Chronic Heart Failure Diagnosis Diagnostics (Basel). [Abstract],

Kourou K, Exarchos KP, Papaloukas C, Sakaloglou P, Exarchos T, Fotiadis DI. (2021) Applied machine learning in cancer research: A systematic review for patient diagnosis, classification and prognosis Comput Struct Biotechnol J. [Abstract],

Kigka VI, Potsika V, Mantzaris M, Tsakanikas V, Koncar I, Fotiadis DI. (2021) Serum Biomarkers in Carotid Artery Disease Diagnostics (Basel). [Abstract],

Sakellarios AI, Siogkas P, Kigka V, Tsompou P, Pleouras D, Kyriakidis S, Karanasiou G, Pelosi G, Nikopoulos S, Naka KK, Rocchiccioli S, Michalis LK, Fotiadis DI. (2021) Error Propagation in the Simulation of Atherosclerotic Plaque Growth and the Prediction of Atherosclerotic Disease Progression Diagnostics (Basel). [Abstract],

Pezoulas VC, Kourou KD, Papaloukas C, Triantafyllia V, Lampropoulou V, Siouti E, Papadaki M, Salagianni M, Koukaki E, Rovina N, Koutsoukou A, Andreakos E, Fotiadis DI. (2021) A Multimodal Approach for the Risk Prediction of Intensive Care and Mortality in Patients with COVID-19 Diagnostics (Basel). [Abstract],

Livadaras I, Koidou V, Pitsili E, Moustaka J, Vontas J, Siden-Kiamos I. (2021) Stably inherited transfer of the bacterial symbiont Candidatus Erwinia dacicola from wild olive fruit flies Bactrocera oleae to a laboratory strain Bull Entomol Res. [Abstract],

Pleouras D, Sakellarios A, Rigas G, Karanasiou GS, Tsompou P, Karanasiou G, Kigka V, Kyriakidis S, Pezoulas V, Gois G, Tachos N, Ramos A, Pelosi G, Rocchiccioli S, Michalis L, Fotiadis DI. (2021) A Novel Approach to Generate a Virtual Population of Human Coronary Arteries for In Silico Clinical Trials of Stent Design IEEE Open J Eng Med Biol. [Abstract],

Kourou K, Manikis G, Poikonen-Saksela P, Mazzocco K, Pat-Horenczyk R, Sousa B, Oliveira-Maia AJ, Mattson J, Roziner I, Pettini G, Kondylakis H, Marias K, Karademas E, Simos P, Fotiadis DI. (2021) A machine learning-based pipeline for modeling medical, socio-demographic, lifestyle and self-reported psychological traits as predictors of mental health outcomes after breast cancer diagnosis: An initial effort to define resilience effects Comput Biol Med. [Abstract],

K. Kourou, V. Pezoulas, E. Georga, Th. Exarchos, C. Papaloukas, M. Voulgarelis, A. Goules, A. Nezos, A.G. Tzioufas, Η.M. Moutsopoulos, C. Mavragani, D.I. Fotiadis (2020) "Predicting Lymphoma Development by Exploiting Genetic Variants and Clinical Findings in a Machine Learning-Based Methodology With Ensemble Classifiers in a Cohort of Sjögren's Syndrome Patients" IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) ,

Tsakanikas VD, Gatsios D, Dimopoulos D, Pardalis A, Pavlou M, Liston MB, Fotiadis DI. (2020) Evaluating the Performance of Balance Physiotherapy Exercises Using a Sensory Platform: The Basis for a Persuasive Balance Rehabilitation Virtual Coaching System Front Digit Health. [Abstract],

Karagianni P, Moulos P, Schmidt D, Odom DT, Talianidis I. (2020) Bookmarking by Non-pioneer Transcription Factors during Liver Development Establishes Competence for Future Gene Activation Cell Rep. [Abstract],

Tripoliti EE, Ioannidou P, Toumpaniaris P, Rammos A, Pacitto D, Lourme JC, Goletsis Y, Naka KK, Errachid A, Fotiadis DI. (2020) Point-of-Care Testing Devices for Heart Failure Analyzing Blood and Saliva Samples IEEE Rev Biomed Eng. [Abstract],

Tsiouris KM, Tsakanikas VD, Gatsios D, Fotiadis DI. (2020) A Review of Virtual Coaching Systems in Healthcare: Closing the Loop With Real-Time Feedback Front Digit Health. [Abstract],

Kalafati L, Mitroulis I, Verginis P, Chavakis T, Kourtzelis I. (2020) Neutrophils as Orchestrators in Tumor Development and Metastasis Formation Front Oncol. [Abstract],

Theodosiou T, Papanikolaou N, Savvaki M, Bonetto G, Maxouri S, Fakoureli E, Eliopoulos AG, Tavernarakis N, Amoutzias GD, Pavlopoulos GA, Aivaliotis M, Nikoletopoulou V, Tzamarias D, Karagogeos D, Iliopoulos I. (2020) UniProt-Related Documents (UniReD): assisting wet lab biologists in their quest on finding novel counterparts in a protein network NAR Genom Bioinform. [Abstract],

Ashour AS, Asran M, Fotiadis DI. (2020) Optimal Power for Microwave Slotted Probes in Ablating Different Hepatocellular Carcinoma Sizes Comput Biol Med. [Abstract],

Pleouras DS, Sakellarios AI, Tsompou P, Kigka V, Kyriakidis S, Rocchiccioli S, Neglia D, Knuuti J, Pelosi G, Michalis LK, Fotiadis DI. (2020) Simulation of atherosclerotic plaque growth using computational biomechanics and patient-specific data Sci Rep. [Abstract],

Tsiouris KM, Konitsiotis S, Koutsouris DD, Fotiadis DI. (2020) Prognostic factors of Rapid symptoms progression in patients with newly diagnosed parkinson's disease Artif Intell Med. [Abstract],

Kourou K, Rigas G, Papaloukas C, Mitsis M, Fotiadis DI. (2020) Cancer classification from time series microarray data through regulatory Dynamic Bayesian Networks Comput Biol Med. [Abstract],

Stone PH, Fotiadis DI. (2020) Enhanced Multifactorial Biomechanical Stress Metrics to Predict Plaque Rupture: Rapid Assessment of Morphology and Plaque Structural Stress JACC Cardiovasc Imaging. [Abstract],

K. Kourou, C. Papaloukas, D.I. Fotiadis (2019) "Modeling biological data through dynamic bayesian networks for oral squamous cell carcinoma classification" World Congress on Medical Physics and Biomedical Engineering (2018) ,

Kigka VI, Sakellarios A, Kyriakidis S, Rigas G, Athanasiou L, Siogkas P, Tsompou P, Loggitsi D, Benz DC, Buechel R, Lemos PA, Pelosi G, Michalis LK, Fotiadis DI. (2019) A three-dimensional quantification of calcified and non-calcified plaques in coronary arteries based on computed tomography coronary angiography images: Comparison with expert's annotations and virtual histology intravascular ultrasound Comput Biol Med. [Abstract],

Grivas KN, Vavva MG, Polyzos D, Carlier A, Geris L, Van Oosterwyck H, Fotiadis DI. (2019) Effect of ultrasound on bone fracture healing: A computational mechanobioregulatory model J Acoust Soc Am. [Abstract],

Berdouses ED, Oulis CJ, Michalaki M, Tripoliti EE, Fotiadis DI. (2019) Histological validation of the automated caries detection system (ACDS) in classifying occlusal caries with the ICDAS II system in vitro Eur Arch Paediatr Dent. [Abstract],

Kourou KD, Pezoulas VC, Georga EI, Exarchos TP, Tsanakas P, Tsiknakis M, Varvarigou T, De Vita S, Tzioufas A, Fotiadis DI. (2019) Cohort Harmonization and Integrative Analysis From a Biomedical Engineering Perspective IEEE Rev Biomed Eng. [Abstract],

Pezoulas VC, Kourou KD, Kalatzis F, Exarchos TP, Venetsanopoulou AI, Zampeli E, Gandolfo S, Skopouli FN, De Vita S, Tzioufas AG, Fotiadis DI. (2019) Enhancing medical data quality through data curation: a case study in primary Sjögren's syndrome Clin Exp Rheumatol. [Abstract],

Tripoliti EE, Karanasiou GS, Kalatzis FG, Bechlioulis A, Goletsis Y, Naka K, Fotiadis DI. (2019) HEARTEN KMS - A knowledge management system targeting the management of patients with heart failure J Biomed Inform. [Abstract],

Pezoulas VC, Kourou KD, Kalatzis F, Exarchos TP, Venetsanopoulou A, Zampeli E, Gandolfo S, Skopouli F, De Vita S, Tzioufas AG, Fotiadis DI. (2019) Medical data quality assessment: On the development of an automated framework for medical data curation Comput Biol Med. [Abstract],

Siogkas PK, Anagnostopoulos CD, Liga R, Exarchos TP, Sakellarios AI, Rigas G, Scholte AJHA, Papafaklis MI, Loggitsi D, Pelosi G, Parodi O, Maaniitty T, Michalis LK, Knuuti J, Neglia D, Fotiadis DI. (2019) Noninvasive CT-based hemodynamic assessment of coronary lesions derived from fast computational analysis: a comparison against fractional flow reserve Eur Radiol. [Abstract],

Georga EI, Príncipe JC, Fotiadis DI. (2019) Short-term prediction of glucose in type 1 diabetes using kernel adaptive filters Med Biol Eng Comput. [Abstract],

Yilmaz C, Karali K, Fodelianaki G, Gravanis A, Chavakis T, Charalampopoulos I, Alexaki VI. (2019) Neurosteroids as regulators of neuroinflammation Front Neuroendocrinol. [Abstract],

Siogkas PK, Stefanou KA, Athanasiou LS, Papafaklis MI, Michalis LK, Fotiadis DI. (2018) Art care: A multi-modality coronary 3D reconstruction and hemodynamic status assessment software Technol Health Care. [Abstract],

Uttam, S., Wong, C, Amorim, I. S., Jafarnejad, S. M., Tansley, S., Yang, J., Prager-Khoutorsky, M., Mogil, J. S., Gkogkas, C. G.* and Khoutorsky, A.* (2018) Translational profiling of dorsal root ganglia and spinal cord in a mouse model of neuropathic pain. Neurobiology of pain , 10.1016/j.ynpai.2018.04.001

Amorim I.S., Kedia S., Kouloulia S., Simbriger K., Gantois I., Jafarnejad S. M., Li Y., Kampaite A., Pooters T., Romanò N and Gkogkas C. G. (2018) Loss of eIF4E phosphorylation engenders depression-like behaviors via selective mRNA translation. The Journal of neuroscience : the official journal of the Society for Neuroscience 21 , 10.1523/JNEUROSCI.2673-17.2018

Jafarnejad, S. M., Chapat, C., Matta-Camacho, E., Gelbart, I. A., Hesketh, G. G., Arguello, M., Garzia, A., Kim, S. H., Attig, J., Shapiro, M., Morita, M., Khoutorsky, A., Alain, T., Gkogkas, C., Stern-Ginossar, N., Tuschl, T., Gingras, A. C., Duchaine, T (2018) Translational control of ERK signaling through miRNA/4EHP-directed silencing. Elife 7 , 10.7554/eLife.35034

Deligianni E, Andreadaki M, Koutsouris K, Siden-Kiamos I. (2018) Sequence and functional divergence of gametocyte-specific parasitophorous vacuole membrane proteins in Plasmodium parasites Mol Biochem Parasitol. [Abstract],

Andreadaki M, Hanssen E, Deligianni E, Claudet C, Wengelnik K, Mollard V, McFadden GI, Abkarian M, Braun-Breton C, Siden-Kiamos I. (2018) Sequential Membrane Rupture and Vesiculation during Plasmodium berghei Gametocyte Egress from the Red Blood Cell Sci Rep. [Abstract],

Deligianni E, Silmon de Monerri NC, McMillan PJ, Bertuccini L, Superti F, Manola M, Spanos L, Louis C, Blackman MJ, Tilley L, Siden-Kiamos I. (2018) Essential role of Plasmodium perforin-like protein 4 in ookinete midgut passage PLoS One. [Abstract],

Vavva MG, Grivas KN, Carlier A, Polyzos D, Geris L, Van Oosterwyck H, Fotiadis DI. (2018) Effect of ultrasound on bone fracture healing: A computational bioregulatory model Comput Biol Med. [Abstract],

Tsiouris ΚΜ, Pezoulas VC, Zervakis M, Konitsiotis S, Koutsouris DD, Fotiadis DI. (2018) A Long Short-Term Memory deep learning network for the prediction of epileptic seizures using EEG signals Comput Biol Med. [Abstract],

Tripoliti EE, Karanasiou GS, Kalatzis FG, Naka KK, Fotiadis DI. (2018) The Evolution of mHealth Solutions for Heart Failure Management Adv Exp Med Biol. [Abstract],

Karanasiou GS, Tachos NS, Sakellarios A, Michalis LK, Conway C, Edelman ER, Fotiadis DI. (2017) In silico assessment of the effects of material on stent deployment Proc IEEE Int Symp Bioinformatics Bioeng. [Abstract],

Potsika VT, Protopappas VC, Grivas KN, Gortsas TV, Raum K, Polyzos DK, Fotiadis DI. (2017) Numerical evaluation of the backward propagating acoustic field in healing long bones J Acoust Soc Am. [Abstract],

Tsiouris KM, Gatsios D, Rigas G, Miljkovic D, Koroušić Seljak B, Bohanec M, Arredondo MT, Antonini A, Konitsiotis S, Koutsouris DD, Fotiadis DI. (2017) PD_Manager: an mHealth platform for Parkinson's disease patient management Healthc Technol Lett. [Abstract],

Sakellarios A, Bourantas CV, Papadopoulou SL, Kitslaar PH, Girasis C, Stone GW, Reiber JHC, Michalis LK, Serruys PW, de Feyter PJ, Garcia-Garcia HM, Fotiadis DI. (2017) The effect of coronary bifurcation and haemodynamics in prediction of atherosclerotic plaque development: a serial computed tomographic coronary angiographic study EuroIntervention. [Abstract],

Lampros C, Papaloukas C, Exarchos T, Fotiadis DI. (2017) HMMs in Protein Fold Classification Methods Mol Biol. [Abstract],

Sakellarios AI, Raber L, Bourantas CV, Exarchos TP, Athanasiou LS, Pelosi G, Koskinas KC, Parodi O, Naka KK, Michalis LK, Serruys PW, Garcia-Garcia HM, Windecker S, Fotiadis DI. (2017) Prediction of Atherosclerotic Plaque Development in an In Vivo Coronary Arterial Segment Based on a Multilevel Modeling Approach IEEE Trans Biomed Eng. [Abstract],

Curra C, McMillan PJ, Spanos L, Mollard V, Deligianni E, McFadden G, Tilley L, Siden-Kiamos I. (2017) Structured illumination microscopy reveals actin I localization in discreet foci in Plasmodium berghei gametocytes Exp Parasitol. [Abstract],

Nikolaou KC, Moulos P, Harokopos V, Chalepakis G, Talianidis I. (2017) Kmt5a Controls Hepatic Metabolic Pathways by Facilitating RNA Pol II Release from Promoter-Proximal Regions Cell Rep. [Abstract],

Gantois, I., Khoutorsky, A., Popic, J., Aguilar-Valles, A., Freemantle, E., Cao, R., Sharma, V., Pooters, T., Nagpal, A., Skalecka, A., Truong, V. T., Wiebe, S., Groves, I. A., Jafarnejad, S. M., Chapat, C., McCullagh, E. A., Gamache, K., Nader, K., Lacaille, J. C., Gkogkas, C. G.* & Sonenberg, N.* (2017) Metformin ameliorates core deficits in a mouse model of fragile X syndrome. Nature medicine 23 , 10.1038/nm.4335

Tuttle, A. H., Tansley, S., Dossett, K., Tohyama, S., Khoutorsky, A., Maldonado-Bouchard, S., Stein, L., Gerstein, L., Crawhall-Duk, H., Pearl, R., Sukosd, M., Leger, P., Hardt, O. M., Yachnin, D., Austin, J. S., Chan, C. M., Pooters, T., Groves, I., Martin, L. J., Sonenberg, N., Gkogkas, C. G.* & Mogil, J. S.* (2017) Social propinquity in rodents as measured by tube cooccupancy differs between inbred and outbred genotypes. Proceedings of the National Academy of Sciences of the United States of America 114 , 10.1073/pnas.1703477114

Chapat, C., Jafarnejad, S. M., Matta-Camacho, E., Hesketh, G. G., Gelbart, I. A., Attig, J., Gkogkas, C. G., Alain, T., Stern-Ginossar, N., Fabian, M. R., Gingras, A. C., Duchaine, T. F. & Sonenberg, N. (2017) Cap-binding protein 4EHP effects translation silencing by microRNAs. Proceedings of the National Academy of Sciences of the United States of America , 10.1073/pnas.1701488114

Karanasiou GS, Papafaklis MI, Conway C, Michalis LK, Tzafriri R, Edelman ER, Fotiadis DI. (2017) Stents: Biomechanics, Biomaterials, and Insights from Computational Modeling Ann Biomed Eng. [Abstract],

Kourou K, Papaloukas C, Fotiadis DI. (2017) Integration of Pathway Knowledge and Dynamic Bayesian Networks for the Prediction of Oral Cancer Recurrence IEEE J Biomed Health Inform. [Abstract],

Sakellarios AI, Bizopoulos P, Papafaklis MI, Athanasiou L, Exarchos T, Bourantas CV, Naka KK, Patterson AJ, Young VE, Gillard JH, Parodi O, Michalis LK, Fotiadis DI. (2017) Natural History of Carotid Atherosclerosis in Relation to the Hemodynamic Environment Angiology. [Abstract],

Gravanis A, Pediaditakis I, Charalampopoulos I. (2017) Synthetic microneurotrophins in therapeutics of neurodegeneration Oncotarget. [Abstract],

Exarchos TP, Rigas G, Bibas A, Kikidis D, Nikitas C, Wuyts FL, Ihtijarevic B, Maes L, Cenciarini M, Maurer C, Macdonald N, Bamiou DE, Luxon L, Prasinos M, Spanoudakis G, Koutsouris DD, Fotiadis DI. (2016) Mining balance disorders' data for the development of diagnostic decision support systems Comput Biol Med. [Abstract],

Kourou K, Rigas G, Exarchos KP, Goletsis Y, Exarchos TP, Jacobs S, Meyns B, Trivella MG, Fotiadis DI. (2016) Prediction of time dependent survival in HF patients after VAD implantation using pre- and post-operative data Comput Biol Med. [Abstract],

Tahmasebi S., Jafarnejad S. M., Tam I. S., Gonatopoulos-Pournatzis T., Matta-Camacho E., Tsukumo Y., Yanagiya A., Li W., Atlasi Y., Caron M., Braunschweig U., Pearl D., Khoutorsky A., Gkogkas C. G., Nadon R., Bourque G., Yang X. J., Tian B., Stunnenberg H (2016) Control of embryonic stem cells self-renewal and differentiation via coordinated splicing and translation of YY2. PNAS , 10.1073/pnas.1615540113

Poirazi, P., Belin, D., Gräff, J., Hanganu‐Opatz, I., and López‐Bendito, G. (2016) Balancing family with a successful career in neuroscience. Eur J Neurosci. 44(2):1797-803 [Abstract],

Yaksi, E., Poirazi, P., Hanganu-Opatz, I. (2016) The road to independence: how to get funding in neuroscience Eur J Neurosci. [Abstract],

Andreadaki M, Deligianni E, Nika F, Siden-Kiamos I. (2016) Expression of the Plasmodium berghei actin II gene is controlled by elements in a long genomic region Parasitol Res. 115(8):3261-5 [Abstract],

Currà C, Gessmann R, Pace T, Picci L, Peruzzi G, Varamogianni-Mamatsi V, Spanos L, Garcia CR, Spaccapelo R, Ponzi M, Siden-Kiamos I. (2016) Release of Plasmodium sporozoites requires proteins with histone-fold dimerization domains Nat Commun. [Abstract],

Andreadaki M, Deligianni E, Nika F, Siden-Kiamos I. (2016) Expression of the Plasmodium berghei actin II gene is controlled by elements in a long genomic region Parasitol Res. [Abstract],

Tripoliti EE, Papadopoulos TG, Karanasiou GS, Naka KK, Fotiadis DI. (2016) Heart Failure: Diagnosis, Severity Estimation and Prediction of Adverse Events Through Machine Learning Techniques Comput Struct Biotechnol J. [Abstract],

Kaprou G., Papadakis G., Papageorgiou D., Kokkoris G., Papadopoulos V., Kefala I., Gizeli E., Tserepi A. (2016) Miniaturized devices for isothermal DNA amplification addressing DNA diagnostics Microsystem Technologies. [Abstract],

Karanasiou GS, Tripoliti EE, Papadopoulos TG, Kalatzis FG, Goletsis Y, Naka KK, Bechlioulis A, Errachid A, Fotiadis DI. (2016) Predicting adherence of patients with HF through machine learning techniques Healthc Technol Lett. [Abstract],

Athanasiou L, Rigas G, Sakellarios AI, Exarchos TP, Siogkas PK, Bourantas CV, Garcia-Garcia HM, Lemos PA, Falcao BA, Michalis LK, Parodi O, Vozzi F, Fotiadis DI. (2016) Three-dimensional reconstruction of coronary arteries and plaque morphology using CT angiography--comparison and registration with IVUS BMC Med Imaging. [Abstract],

Berdouses ED, Koutsouri GD, Tripoliti EE, Matsopoulos GK, Oulis CJ, Fotiadis DI. (2015) A computer-aided automated methodology for the detection and classification of occlusal caries from photographic color images Comput Biol Med. [Abstract],

Georga EI, Protopappas VC, Polyzos D, Fotiadis DI. (2015) Evaluation of short-term predictors of glucose concentration in type 1 diabetes combining feature ranking with regression models Med Biol Eng Comput. [Abstract],

Exarchos TP, Bellos C, Bakola I, Kikidis D, Bibas A, Koutsouris D, Fotiadis DI. (2015) Management and modeling of balance disorders using decision support systems: the EMBALANCE project Adv Exp Med Biol. [Abstract],

Exarchos KP, Kourou K, Exarchos TP, Papaloukas C, Karamouzis MV, Fotiadis DI. (2015) Sequence patterns mediating functions of disordered proteins Adv Exp Med Biol. [Abstract],

Cao, R., Gkogkas, C. G., de Zavalia, N., Blum, I. D., Yanagiya, A., Tsukumo, Y., Xu, H., Lee, C., Storch, K. F., Liu, A. C., Amir, S. & Sonenberg, N. (2015) Light-regulated translational control of circadian behavior by eIF4E phosphorylation. Nature Neuroscience 18 , 10.1038/nn.4010

Fotakis P, Kuivenhoven JA, Dafnis E, Kardassis D, Zannis VI. (2015) The Effect of Natural LCAT Mutations on the Biogenesis of HDL Biochemistry. [Abstract],

Charlton JJ, Tsoukatou D, Mamalaki C, Chatzidakis I. (2015) Programmed death 1 regulates memory phenotype CD4 T cell accumulation, inhibits expansion of the effector memory phenotype subset and modulates production of effector cytokines PLoS One. [Abstract],

Andreadaki M, Mollenkopf HJ, Nika F, Brady D, Tewari R, Matuschewski K, Siden-Kiamos I. (2015) Global expression profiling reveals shared and distinct transcript signatures in arrested act2(-) and CDPK4(-) Plasmodium berghei gametocytes Mol Biochem Parasitol. [Abstract],

Athanasiou LS, Rigas G, Sakellarios A, Bourantas CV, Stefanou K, Fotiou E, Exarchos TP, Siogkas P, Naka KK, Parodi O, Vozzi F, Teng Z, Young VE, Gillard JH, Prati F, Michalis LK, Fotiadis DI. (2015) Error propagation in the characterization of atheromatic plaque types based on imaging Comput Methods Programs Biomed. [Abstract],

Siogkas PK, Papafaklis MI, Sakellarios AI, Stefanou KA, Bourantas CV, Athanasiou LS, Exarchos TP, Naka KK, Michalis LK, Parodi O, Fotiadis DI. (2015) Patient-specific simulation of coronary artery pressure measurements: an in vivo three-dimensional validation study in humans Biomed Res Int. [Abstract],

Athanasiou LS, Rigas GA, Sakellarios AI, Exarchos TP, Siogkas PK, Naka KK, Panetta D, Pelosi G, Vozzi F, Michalis LK, Parodi O, Fotiadis DI. (2015) Computerized methodology for micro-CT and histological data inflation using an IVUS based translation map Comput Biol Med. [Abstract],

Efstathopoulos P, Kourgiantaki A, Karali K, Sidiropoulou K, Margioris AN, Gravanis A, Charalampopoulos I. (2015) Fingolimod induces neurogenesis in adult mouse hippocampus and improves contextual fear memory Transl Psychiatry. [Abstract],

Exarchos KP, Carpegianni C, Rigas G, Exarchos TP, Vozzi F, Sakellarios A, Marraccini P, Naka K, Michalis L, Parodi O, Fotiadis DI. (2015) A multiscale approach for modeling atherosclerosis progression IEEE J Biomed Health Inform. [Abstract],

Kourou, K., Exarchos, T. P., Exarchos, K. P., Karamouzis, M. V. & Fotiadis, D. I. (2015) Machine learning applications in cancer prognosis and prediction. Computational and structural biotechnology journal ,

Andreadaki M, Morgan RN, Deligianni E, Kooij TW, Santos JM, Spanos L, Matuschewski K, Louis C, Mair GR, Siden-Kiamos I. (2014) Genetic crosses and complementation reveal essential functions for the Plasmodium stage-specific actin2 in sporogonic development Cell Microbiol. [Abstract],

Vahokoski J, Bhargav SP, Desfosses A, Andreadaki M, Kumpula EP, Martinez SM, Ignatev A, Lepper S, Frischknecht F, Sidén-Kiamos I, Sachse C, Kursula I. (2014) Structural differences explain diverse functions of Plasmodium actins PLoS Pathog. [Abstract],

Tzallas AT, Tsipouras MG, Rigas G, Tsalikakis DG, Karvounis EC, Chondrogiorgi M, Psomadellis F, Cancela J, Pastorino M, Waldmeyer MT, Konitsiotis S, Fotiadis DI. (2014) PERFORM: a system for monitoring, assessment and management of patients with Parkinson's disease Sensors (Basel). [Abstract],

Cancela J, Pastorino M, Tzallas AT, Tsipouras MG, Rigas G, Arredondo MT, Fotiadis DI. (2014) Wearability assessment of a wearable system for Parkinson's disease remote monitoring based on a body area network of sensors Sensors (Basel). [Abstract],

Bellos C, Rigas G, Spiridon IF, Bibas A, Iliopoulou D, Böhnke F, Koutsouris D, Fotiadis DI. (2014) Reconstruction of cochlea based on micro-CT and histological images of the human inner ear Biomed Res Int. [Abstract],

Lampros C, Simos T, Exarchos TP, Exarchos KP, Papaloukas C, Fotiadis DI. (2014) Assessment of optimized Markov models in protein fold classification J Bioinform Comput Biol. [Abstract],

Athanasiou L, Sakellarios AI, Bourantas CV, Tsirka G, Siogkas P, Exarchos TP, Naka KK, Michalis LK, Fotiadis DI. (2014) Currently available methodologies for the processing of intravascular ultrasound and optical coherence tomography images Expert Rev Cardiovasc Ther. [Abstract],

Vavva MG, Gergidis LN, Protopappas VC, Charalambopoulos A, Polyzos D, Fotiadis DI. (2014) A study on Rayleigh wave dispersion in bone according to Mindlin's Form II gradient elasticity J Acoust Soc Am. [Abstract],

Kalantzaki K, Bei ES, Exarchos KP, Zervakis M, Garofalakis M, Fotiadis DI. (2014) Nonparametric network design and analysis of disease genes in oral cancer progression IEEE J Biomed Health Inform. [Abstract],

Papanikolaou N, Pavlopoulos GA, Pafilis E, Theodosiou T, Schneider R, Satagopam VP, Ouzounis CA, Eliopoulos AG, Promponas VJ, Iliopoulos I. (2014) BioTextQuest(+): a knowledge integration platform for literature mining and concept discovery Bioinformatics. [Abstract],

Potsika VT, Grivas KN, Protopappas VC, Vavva MG, Raum K, Rohrbach D, Polyzos D, Fotiadis DI. (2014) Application of an effective medium theory for modeling ultrasound wave propagation in healing long bones Ultrasonics. [Abstract],

Tzallas AT, Katertsidis NS, Karvounis EC, Tsipouras MG, Rigas G, Goletsis Y, Zielinski K, Fresiello L, Molfetta AD, Ferrari G, Terrovitis JV, Trivella MG, Fotiadis DI. (2014) Modeling and simulation of speed selection on left ventricular assist devices Comput Biol Med. [Abstract],

Bellos CC, Papadopoulos A, Rosso R, Fotiadis DI. (2014) Identification of COPD patients' health status using an intelligent system in the CHRONIOUS wearable platform IEEE J Biomed Health Inform. [Abstract],

Athanasiou LS, Bourantas CV, Rigas G, Sakellarios AI, Exarchos TP, Siogkas PK, Ricciardi A, Naka KK, Papafaklis MI, Michalis LK, Prati F, Fotiadis DI. (2014) Methodology for fully automated segmentation and plaque characterization in intracoronary optical coherence tomography images J Biomed Opt. 2014 Feb;19(2):026009. [Abstract],

Kourou K, Exarchos TP, Exarchos KP, Karamouzis MV, Fotiadis DI. (2014) Machine learning applications in cancer prognosis and prediction Comput Struct Biotechnol J. [Abstract],

Bellos CC, Papadopoulos A, Rosso R, Fotiadis DI. (2014) Identification of COPD patients' health status using an intelligent system in the CHRONIOUS wearable platform IEEE J Biomed Health Inform. [Abstract],

Karvounis EC, Tsipouras MG, Tzallas AT, Katertsidis NS, Stefanou K, Goletsis Y, Frigerio M, Verde A, Caruso R, Meyns B, Terrovitis J, Trivella MG, Fotiadis DI. (2014) A decision support system for the treatment of patients with ventricular assist device support Methods Inf Med. [Abstract],

Athanasiou LS, Bourantas CV, Rigas G, Sakellarios AI, Exarchos TP, Siogkas PK, Ricciardi A, Naka KK, Papafaklis MI, Michalis LK, Prati F, Fotiadis DI. (2014) Methodology for fully automated segmentation and plaque characterization in intracoronary optical coherence tomography images J Biomed Opt. [Abstract],

Papadimitriou L, Zerva I, Georgouli M, Makatounakis T, Papamatheakis J, Athanassakis I. (2013) DOα⁻β⁺ expression in favor of HLA-DR engagement in exosomes Immunobiology. [Abstract],

Rigas G, Nikou C, Goletsis Y, Fotiadis DI. (2013) Hierarchical similarity transformations between Gaussian mixtures IEEE Trans Neural Netw Learn Syst. [Abstract],

Georga EI, Protopappas VC, Ardigò D, Polyzos D, Fotiadis DI. (2013) A glucose model based on support vector regression for the prediction of hypoglycemic events under free-living conditions Diabetes Technol Ther. [Abstract],

Giannakeas N, Karvelis PS, Exarchos TP, Kalatzis FG, Fotiadis DI. (2013) Segmentation of microarray images using pixel classification-comparison with clustering-based methods Comput Biol Med. [Abstract],

Sakellarios AI, Papafaklis MI, Siogkas P, Athanasiou LS, Exarchos TP, Stefanou K, Bourantas CV, Naka KK, Michalis LK, Parodi O, Fotiadis DI. (2013) Patient-specific computational modeling of subendothelial LDL accumulation in a stenosed right coronary artery: effect of hemodynamic and biological factors Am J Physiol Heart Circ Physiol. [Abstract],

Tripoliti EE, Tzallas AT, Tsipouras MG, Rigas G, Bougia P, Leontiou M, Konitsiotis S, Chondrogiorgi M, Tsouli S, Fotiadis DI. (2013) Automatic detection of freezing of gait events in patients with Parkinson's disease Comput Methods Programs Biomed. [Abstract],

Georga EI, Protopappas VC, Ardigo D, Marina M, Zavaroni I, Polyzos D, Fotiadis DI. (2013) Multivariate prediction of subcutaneous glucose concentration in type 1 diabetes patients based on support vector regression IEEE J Biomed Health Inform. [Abstract],

Kyrmizi I, Ioannou M, Hatziapostolou M, Tsichlis PN, Boumpas DT, Tassiulas I. (2013) Tpl2 kinase regulates FcγR signaling and immune thrombocytopenia in mice J Leukoc Biol. [Abstract],

Ran, I., Gkogkas, C. G., Vasuta, C., Tartas, M., Khoutorsky, A., Laplante, I., Parsyan, A., Nevarko, T., Sonenberg, N. & Lacaille, J. C. (2013) Selective regulation of GluA subunit synthesis and AMPA receptor-mediated synaptic function and plasticity by the translation repressor 4E-BP2 in hippocampal pyramidal cells. The Journal of neuroscience : the official journal of the Society for Neuroscience 33 , 10.1523/JNEUROSCI.3264-12.2013

Karvounis EC, Exarchos TP, Fotiou E, Sakellarios AI, Iliopoulou D, Koutsouris D, Fotiadis DI. (2013) ART-ML: a new markup language for modelling and representation of biological processes in cardiovascular diseases Technol Health Care. [Abstract],

Gkogkas, C. G., Khoutorsky, A., Ran, I., Rampakakis, E., Nevarko, T., Weatherill, D. B., Vasuta, C., Yee, S., Truitt, M., Dallaire, P., Major, F., Lasko, P., Ruggero, D., Nader, K., Lacaille, J. C. & Sonenberg, N. (2013) Autism-related deficits via dysregulated eIF4E-dependent translational control. Nature 493 , 10.1038/nature11628

Athanasiou LS, Karvelis PS, Sakellarios AI, Exarchos TP, Siogkas PK, Tsakanikas VD, Naka KK, Bourantas CV, Papafaklis MI, Koutsouri G, Michalis LK, Parodi O, Fotiadis DI. (2013) A hybrid plaque characterization method using intravascular ultrasound images Technol Health Care. [Abstract],

Exarchos KP, Goletsis Y, Fotiadis DI. (2012) A multiscale and multiparametric approach for modeling the progression of oral cancer BMC Med Inform Decis Mak. [Abstract],

Sakellarios AI, Stefanou K, Siogkas P, Tsakanikas VD, Bourantas CV, Athanasiou L, Exarchos TP, Fotiou E, Naka KK, Papafaklis MI, Patterson AJ, Young VE, Gillard JH, Michalis LK, Fotiadis DI. (2012) Novel methodology for 3D reconstruction of carotid arteries and plaque characterization based upon magnetic resonance imaging carotid angiography data Magn Reson Imaging. [Abstract],

Athanasiou LS, Karvelis PS, Tsakanikas VD, Naka KK, Michalis LK, Bourantas CV, Fotiadis DI. (2012) A novel semiautomated atherosclerotic plaque characterization method using grayscale intravascular ultrasound images: comparison with virtual histology IEEE Trans Inf Technol Biomed. [Abstract],

Giannakeas N, Kalatzis F, Tsipouras MG, Fotiadis DI. (2012) Spot addressing for microarray images structured in hexagonal grids Comput Methods Programs Biomed. [Abstract],

Exarchos KP, Goletsis Y, Fotiadis DI. (2012) Multiparametric decision support system for the prediction of oral cancer reoccurrence IEEE Trans Inf Technol Biomed. [Abstract],

Exarchos KP, Exarchos TP, Rigas G, Papaloukas C, Fotiadis DI. (2011) Extraction of consensus protein patterns in regions containing non-proline cis peptide bonds and their functional assessment BMC Bioinformatics. [Abstract],

Oikonomou VP, Tripoliti EE, Fotiadis DI. (2010) Bayesian methods for FMRI time-series analysis using a nonstationary model for the noise IEEE Trans Inf Technol Biomed. [Abstract],

Karvounis EC, Tsipouras MG, Papaloukas C, Tsalikakis DG, Naka KK, Fotiadis DI. (2010) A non-invasive methodology for fetal monitoring during pregnancy Methods Inf Med. [Abstract],

Bidinosti, M., Ran, I., Sanchez-Carbente, M. R., Martineau, Y., Gingras, A. C., Gkogkas, C., Raught, B., Bramham, C. R., Sossin, W. S., Costa-Mattioli, M., DesGroseillers, L., Lacaille, J. C. & Sonenberg, N. (2010) Postnatal deamidation of 4E-BP2 in brain enhances its association with raptor and alters kinetics of excitatory synaptic transmission. Mol Cell 37 , 10.1016/j.molcel.2010.02.022

Exarchos KP, Exarchos TP, Papaloukas C, Troganis AN, Fotiadis DI. (2009) PBOND: web server for the prediction of proline and non-proline cis/trans isomerization Genomics Proteomics Bioinformatics. [Abstract],

Exarchos KP, Exarchos TP, Papaloukas C, Troganis AN, Fotiadis DI. (2009) Detection of discriminative sequence patterns in the neighborhood of proline cis peptide bonds and their functional annotation BMC Bioinformatics. [Abstract],

Tzallas AT, Tsipouras MG, Fotiadis DI. (2009) Epileptic seizure detection in EEGs using time-frequency analysis IEEE Trans Inf Technol Biomed. [Abstract],

Karvounis EC, Tsipouras MG, Fotiadis DI. (2009) Detection of fetal heart rate through 3-D phase space analysis from multivariate abdominal recordings IEEE Trans Biomed Eng. [Abstract],

Giannakeas N, Fotiadis DI. (2009) An automated method for gridding and clustering-based segmentation of cDNA microarray images Comput Med Imaging Graph. [Abstract],

Exarchos KP, Papaloukas C, Exarchos TP, Troganis AN, Fotiadis DI. (2009) Prediction of cis/trans isomerization using feature selection and support vector machines J Biomed Inform. [Abstract],

Karvelis PS, Tzallas AT, Fotiadis DI, Georgiou I. (2008) A multichannel watershed-based segmentation method for multispectral chromosome classification IEEE Trans Med Imaging. [Abstract],

Exarchos TP, Papaloukas C, Lampros C, Fotiadis DI. (2008) Mining sequential patterns for protein fold recognition J Biomed Inform. [Abstract],

Tzallas AT, Tsipouras MG, Fotiadis DI. (2007) Automatic seizure detection based on time-frequency analysis and artificial neural networks Comput Intell Neurosci. [Abstract],

Tsipouras MG, Voglis C, Fotiadis DI. (2007) A framework for fuzzy expert system creation--application to cardiovascular diseases IEEE Trans Biomed Eng. [Abstract],

Protopappas VC, Kourtis IC, Kourtis LC, Malizos KN, Massalas CV, Fotiadis DI. (2007) Three-dimensional finite element modeling of guided ultrasound wave propagation in intact and healing long bones J Acoust Soc Am. [Abstract],

Katsis CD, Exarchos TP, Papaloukas C, Goletsis Y, Fotiadis DI, Sarmas I. (2007) A two-stage method for MUAP classification based on EMG decomposition Comput Biol Med. [Abstract],

Lampros C, Costas Papaloukas, Exarchos TP, Yorgos Goletsis, Fotiadis DI. (2007) Sequence-based protein structure prediction using a reduced state-space hidden Markov model Comput Biol Med. [Abstract],

Oikonomou VP, Tzallas AT, Fotiadis DI. (2007) A Kalman filter based methodology for EEG spike enhancement Comput Methods Programs Biomed. [Abstract],

Katsis CD, Ganiatsas G, Fotiadis DI. (2006) An integrated telemedicine platform for the assessment of affective physiological states Diagn Pathol. [Abstract],

Katsis CD, Goletsis Y, Likas A, Fotiadis DI, Sarmas I. (2006) A novel method for automated EMG decomposition and MUAP classification Artif Intell Med. [Abstract],

Malizos KN, Papachristos AA, Protopappas VC, Fotiadis DI. (2006) Transosseous application of low-intensity ultrasound for the enhancement and monitoring of fracture healing process in a sheep osteotomy model Bone. [Abstract],

Tsipouras MG, Fotiadis DI. (2004) Automatic arrhythmia detection based on time and time-frequency analysis of heart rate variability Comput Methods Programs Biomed. [Abstract],

Michaelidis, T. M., and I. Grummt. (2002) Mechanism of inhibition of RNA polymerase I transcription by DNA-dependent protein kinase Biol. Chem. ,

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